ENST00000525636.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000525636.1 |
Source |
Gencode19 |
Same with |
lnc-SWAP70-1:4,NONHSAT017943 |
Classification |
intergenic |
Length |
638 nt |
Genomic location |
chr11+:9797192..9829585 |
Exon number |
4 |
Exons |
9797192..9797312,9801364..9801489,9801923..9802122,9829395..9829585 |
Genome context |
|
Sequence |
000001 TGCCTCTGGG TTGGTGAACA CATCAGATGC TGGGCAGGTG GTGTGTTGCC TCCCTCCATA CCATGCATCT CTTCCCTTTG 000080
000081 GCTGATCCTG AGGTGTATCC CTTAGAAATA AGCTGGTAAA TAATAATGCT GTGTGCTCCC TCTTTGCCTG CTACTGAACA 000160 000161 ATGACGTCTC TTGTTGTGAA CCCCACTGGC AGAGCACGGA CCATGGAAGC ATCTTTTGGC AGCACCAGAG AACTGAGCAT 000240 000241 CTCAAAGCAT GAGTTCTTCT GTTTCTTCTG CGTGGGTTGA CCATGGGCAT CAGGCATCAG AGATACAACT CTGGATCTTG 000320 000321 TCCATCCATT GCTGGGCACT CTGTCCATCC TGGGCGCAGA AGTTATACAC ACGTTTGCTG GTCTTGAGCT ACAAAACCAA 000400 000401 ATGACAGTGA ACCAGAGATG AAGGGCAGGG CTGTTTTATG GATTTGGGAG TCTACTGCTA AGATTTCAGC ATGTCCTGTG 000480 000481 GCTGAGTTAA TCAGAGTTAT GACAGGAAGG TACCGGGCAC ACCATCGCAA TGCTCCATCA ATGCTAGTAT GTTGTGTTCT 000560 000561 TTCCTTCATA TCAAGTCAAC TCAAGCTTGC TCTACTTACC TGGTGTACAC AGTCTAAGAA CTGTAAGAAG ACTGGAGC |
Predicted Small Protein
Name | ENST00000525636.1_smProtein_248:403 |
Length | 52 |
Molecular weight | 5860.7432 |
Aromaticity | 0.117647058824 |
Instability index | 44.468627451 |
Isoelectric point | 8.77105712891 |
Runs | 8 |
Runs residual | 0.00262085032033 |
Runs probability | 0.0285285285286 |
Amino acid sequence | MSSSVSSAWVDHGHQASEIQLWILSIHCWALCPSWAQKLYTRLLVLSYKTK |
Secondary structure | LLLLHHHHHHLLLLLHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |