ENST00000525154.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000525154.1 |
Source |
Gencode19 |
Same with |
lnc-SBF2-2:3,NONHSAT017937 |
Classification |
intergenic |
Length |
2168 nt |
Genomic location |
chr11-:9776676..9779711 |
Exon number |
2 |
Exons |
9776676..9778445,9779314..9779711 |
Genome context |
|
Sequence |
000001 CAGGGACTTC CTAGGCCACG CCACGCCGCT CCACCAGCTC AGGGAACCCC CTTGGCCGTG CAGACCTGCG CCACAGGGTC 000080
000081 GTTTCCTCCC CTCCTTCCCT CGAAAGCGTA TGCATTTCGT TGCCCCTGGA ACTGGGGTCA TTTCAGGACC TCCCAAGGAG 000160 000161 GGTCAGGATG GTGGTATTGG CCTTAGGGGA CGCGGGCTCA GGTTGGCGGT TGAACCGCAT GTTCCTGTTT CAAACAAACC 000240 000241 TAAATGTAGG CCTGGAAGGC TGTGCACTGA AATCCTAGTA TTAGGTTGGT GCAAAATTAA TTGCGATTTT TGCCATTGTA 000320 000321 GGTTGTCTGC AGAGTGAGAT TATGGCGAAG CATTTTATTC TTTTTACAAA CCTGCTTTTT CTCAGTTTTC CACATTGGAT 000400 000401 TTGCCAGCTA CCTGCCTTTG CAGGACACCT CAGAAGTTAC AGACTTGCCT GTGGAAATGC AGAGAGCACC TGAGGTATTT 000480 000481 CCCGGACTCT CCAGTAGTAG CCTTGAATGG CTGACCAACC GCAGTCACCT GCCAGATCTT CTCAGAACCG GCCAGCCCAC 000560 000561 CAGCGACAGG CCCATTAAGT GGCCTGGCCC AGCCCAGATG GAAAACCCCC TCCACGTGAC TTTCTAAAGA ACATGCATGA 000640 000641 AGACAAAACA CCAGGTGCCT CAGGTGTGAC ACCCTGAGGA CACATCACCT GTACAGTATC CTAACCCACC CAAGATGACA 000720 000721 CAGTAAGGTA AAACCACAGT AGAGCCCAGG CCTGTTTGAC TCTGAAGTCC AGGCTCCTTT CCAACTTAGT GCCCTAAAGG 000800 000801 CCTGATTGGG GTGGGGGTAG GCAGGAAGAT TCAAGCACTG ATTGTTTGTA GCCCAGGCTG GGAGGGCAAC AGCTCTAGAA 000880 000881 AAAAAGTCAC TCACTGCTTT AACCATCTTC CAGCTAACTG CAGTGAGGTG TACAGGGCCA TGGGGCTCTG GGATGAACTC 000960 000961 TTCCACCTCT ACACCTTGTA AACAAGGATT CCAGACACAC CCTCCAAATG GGAATGGAGA CACACGTTTG GCAGAGTTGG 001040 001041 ACAGTAACGC TGCTCTCCTA TCAGCCTGGA CTTTGAGGGG AGTGGAAAAC ATGAGTGTGG AGGTGCAGCA GTCCTGGTAT 001120 001121 CCCCTGAAAC CAGCCTGTGG GGGGAACAGT CTTCCCAGGG GAGCTGCTCA GGATCGTCCT GGTCCCATGC ATCAGGAAGA 001200 001201 AAAGGGAACC TGAGAGCAGA GGGAAAATGC AGAAAGTGGG GCAGGGAGAC TGCTCCCTGA AACCCCCATG GGCTGCTGGT 001280 001281 CCAAGCAGAA AGTGTTGTCG GAGGGGGGAG AGGCAGGGTG AAATGGGACA GGAAACGAGG ACTTCCGATG AGGAGGAGGA 001360 001361 GGGGGCAGTG GGCTGCGGGT CTTGGGGACT GAACAGAATG GGGTTTGCTA GACAGAGCTT TCGTCTACCC ACTCCTGAAG 001440 001441 TCCTGCTGGA CCTCAGCTGG CCCTTGTGAA CTGTTGAGGG GGATATAAAC ACAAAGGCCT GCATTCCTGT GGGTGCACAA 001520 001521 TCCTAAGAGA CCATGGACTG CCTGTGTGTG GTGGGAACAG GAAAAGGAGG CTGAGTGTAG CCCTGCTTGG AATTTAGTGT 001600 001601 CCACCACAGA TGTATCCACT ACCCAGGGCC AAAGACTCGG CAGCCTCAGA AGACTCAATG GAAGCTGAGC ACAGGACTAG 001680 001681 AAAGGGTCAG GGCCCTCCTC TGTATGTAGG GGTGGCACAT GGCCACTAGC TGGGTGATGG GGCACTGAGA AATTAAATGT 001760 001761 TTGACATAAA AATGTAATCA GGACCCGAGA GGAGGTGGGT GGTGTAATGA ACAGCATCCT AGAAGTCCGG TACAGATTTC 001840 001841 ACGTGTCACC TTCTAGTTCC TTATCTGAAA TTGAAAGGTG AGGTCAGGTG CAGTGGCTCA GGCCTGTAAT CCCAGCACTT 001920 001921 AGGGAGGCTG AGGAGGGCAT ATCATTGAGG TCAGGTGTTT GAGACCAGCC TGGCCAACAT GGTGAAACCT CTACTAAAAA 002000 002001 TACGAAAATT AGCCGGCTGT GCTGCACACG CCTGTCGTCC CAGCTACTTG GGAGGCTGAG GCAGGAGAAT CCCTTGAACC 002080 002081 TGGGAGGCAG AGGCTGCAGT GAGCTGAGAT CACACCACTG CACTCAAGCC TGGGCATCAC AGCGAGACTT CTTAAAAAAA 002160 002161 AAAAAAAA |
Predicted Small Protein
Name | ENST00000525154.1_smProtein_1226:1468 |
Length | 81 |
Molecular weight | 8853.9163 |
Aromaticity | 0.0625 |
Instability index | 40.105 |
Isoelectric point | 6.22979736328 |
Runs | 9 |
Runs residual | 0.0263157894737 |
Runs probability | 0.039039039039 |
Amino acid sequence | MQKVGQGDCSLKPPWAAGPSRKCCRRGERQGEMGQETRTSDEEEEGAVGCGSWGLNRMGF ARQSFRLPTPEVLLDLSWPL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLEEELLLLLLLLLL LEEELLLLLLLEEELLLLLL |
PRMN | - |
PiMo | - |