ENST00000525154.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000525154.1

Source

Gencode19

Same with

lnc-SBF2-2:3,NONHSAT017937

Classification

intergenic

Length

2168 nt

Genomic location

chr11-:9776676..9779711

Exon number

2

Exons

9776676..9778445,9779314..9779711

Genome context

Sequence
000001 CAGGGACTTC CTAGGCCACG CCACGCCGCT CCACCAGCTC AGGGAACCCC CTTGGCCGTG CAGACCTGCG CCACAGGGTC 000080
000081 GTTTCCTCCC CTCCTTCCCT CGAAAGCGTA TGCATTTCGT TGCCCCTGGA ACTGGGGTCA TTTCAGGACC TCCCAAGGAG 000160
000161 GGTCAGGATG GTGGTATTGG CCTTAGGGGA CGCGGGCTCA GGTTGGCGGT TGAACCGCAT GTTCCTGTTT CAAACAAACC 000240
000241 TAAATGTAGG CCTGGAAGGC TGTGCACTGA AATCCTAGTA TTAGGTTGGT GCAAAATTAA TTGCGATTTT TGCCATTGTA 000320
000321 GGTTGTCTGC AGAGTGAGAT TATGGCGAAG CATTTTATTC TTTTTACAAA CCTGCTTTTT CTCAGTTTTC CACATTGGAT 000400
000401 TTGCCAGCTA CCTGCCTTTG CAGGACACCT CAGAAGTTAC AGACTTGCCT GTGGAAATGC AGAGAGCACC TGAGGTATTT 000480
000481 CCCGGACTCT CCAGTAGTAG CCTTGAATGG CTGACCAACC GCAGTCACCT GCCAGATCTT CTCAGAACCG GCCAGCCCAC 000560
000561 CAGCGACAGG CCCATTAAGT GGCCTGGCCC AGCCCAGATG GAAAACCCCC TCCACGTGAC TTTCTAAAGA ACATGCATGA 000640
000641 AGACAAAACA CCAGGTGCCT CAGGTGTGAC ACCCTGAGGA CACATCACCT GTACAGTATC CTAACCCACC CAAGATGACA 000720
000721 CAGTAAGGTA AAACCACAGT AGAGCCCAGG CCTGTTTGAC TCTGAAGTCC AGGCTCCTTT CCAACTTAGT GCCCTAAAGG 000800
000801 CCTGATTGGG GTGGGGGTAG GCAGGAAGAT TCAAGCACTG ATTGTTTGTA GCCCAGGCTG GGAGGGCAAC AGCTCTAGAA 000880
000881 AAAAAGTCAC TCACTGCTTT AACCATCTTC CAGCTAACTG CAGTGAGGTG TACAGGGCCA TGGGGCTCTG GGATGAACTC 000960
000961 TTCCACCTCT ACACCTTGTA AACAAGGATT CCAGACACAC CCTCCAAATG GGAATGGAGA CACACGTTTG GCAGAGTTGG 001040
001041 ACAGTAACGC TGCTCTCCTA TCAGCCTGGA CTTTGAGGGG AGTGGAAAAC ATGAGTGTGG AGGTGCAGCA GTCCTGGTAT 001120
001121 CCCCTGAAAC CAGCCTGTGG GGGGAACAGT CTTCCCAGGG GAGCTGCTCA GGATCGTCCT GGTCCCATGC ATCAGGAAGA 001200
001201 AAAGGGAACC TGAGAGCAGA GGGAAAATGC AGAAAGTGGG GCAGGGAGAC TGCTCCCTGA AACCCCCATG GGCTGCTGGT 001280
001281 CCAAGCAGAA AGTGTTGTCG GAGGGGGGAG AGGCAGGGTG AAATGGGACA GGAAACGAGG ACTTCCGATG AGGAGGAGGA 001360
001361 GGGGGCAGTG GGCTGCGGGT CTTGGGGACT GAACAGAATG GGGTTTGCTA GACAGAGCTT TCGTCTACCC ACTCCTGAAG 001440
001441 TCCTGCTGGA CCTCAGCTGG CCCTTGTGAA CTGTTGAGGG GGATATAAAC ACAAAGGCCT GCATTCCTGT GGGTGCACAA 001520
001521 TCCTAAGAGA CCATGGACTG CCTGTGTGTG GTGGGAACAG GAAAAGGAGG CTGAGTGTAG CCCTGCTTGG AATTTAGTGT 001600
001601 CCACCACAGA TGTATCCACT ACCCAGGGCC AAAGACTCGG CAGCCTCAGA AGACTCAATG GAAGCTGAGC ACAGGACTAG 001680
001681 AAAGGGTCAG GGCCCTCCTC TGTATGTAGG GGTGGCACAT GGCCACTAGC TGGGTGATGG GGCACTGAGA AATTAAATGT 001760
001761 TTGACATAAA AATGTAATCA GGACCCGAGA GGAGGTGGGT GGTGTAATGA ACAGCATCCT AGAAGTCCGG TACAGATTTC 001840
001841 ACGTGTCACC TTCTAGTTCC TTATCTGAAA TTGAAAGGTG AGGTCAGGTG CAGTGGCTCA GGCCTGTAAT CCCAGCACTT 001920
001921 AGGGAGGCTG AGGAGGGCAT ATCATTGAGG TCAGGTGTTT GAGACCAGCC TGGCCAACAT GGTGAAACCT CTACTAAAAA 002000
002001 TACGAAAATT AGCCGGCTGT GCTGCACACG CCTGTCGTCC CAGCTACTTG GGAGGCTGAG GCAGGAGAAT CCCTTGAACC 002080
002081 TGGGAGGCAG AGGCTGCAGT GAGCTGAGAT CACACCACTG CACTCAAGCC TGGGCATCAC AGCGAGACTT CTTAAAAAAA 002160
002161 AAAAAAAA
[back to top]

Predicted Small Protein

Name ENST00000525154.1_smProtein_1226:1468
Length 81
Molecular weight 8853.9163
Aromaticity 0.0625
Instability index 40.105
Isoelectric point 6.22979736328
Runs 9
Runs residual 0.0263157894737
Runs probability 0.039039039039
Amino acid sequence MQKVGQGDCSLKPPWAAGPSRKCCRRGERQGEMGQETRTSDEEEEGAVGCGSWGLNRMGF
ARQSFRLPTPEVLLDLSWPL
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLEEELLLLLLLLLL
LEEELLLLLLLEEELLLLLL
PRMN -
PiMo -