ENST00000521025.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000521025.1 |
Source |
Gencode19 |
Same with |
lnc-RP11-582J16.5.1-1:1 |
Classification |
antisense |
Length |
2750 nt |
Genomic location |
chr8-:22471421..22474170 |
Exon number |
1 |
Exons |
22471421..22474170 |
Genome context |
|
Sequence |
000001 TTTTAGTAGA GACGGCGTTT CACTATATTG GCCAGGCTGG TCTCAAACTC CTGACCTCAT GATCTGCCCA CCTCGGTCTC 000080
000081 CCAAAGTGCT GGGATTACAG GGGTGAGCTA CAGCGCCCGG CCTACAAAAT TTTCTAGTTA ACCATCAGGC AATCAAAGCA 000160 000161 CCCCACTCTG CCAAGCGTTC TCAGTGACAA GGGTTTCTGT GCTGTCAGGC TGCTCAGCCA TGCTCCCTGC ACTCTGCGCC 000240 000241 ACCTTCCCTT GCACTAGGTG TGCTACTTAC TAGCTGTGCG GCCTCAGTCC ATGCCGAGCA AGGGTGCAGG GAATGAGCTA 000320 000321 AGGCACAGGA AGCGCTCGGA ACAGAGCCCG GGGTAAAGGT GCGCGGTCAC GGTAAGCACT ATGACAGCCC GAGGTGGCAG 000400 000401 GGTACTCACC AGCGGGGCCT CTGACTCTGT AGCCGGGCCC TCATTCTGTG CCTCATCCTT GGGCTCCTTG ACCACCTCCT 000480 000481 CTTTGATGGC TTCTTCCTCC TTGGTGGCTT CTTCCTTGGC CGCCTCCTCC TTCTCAGGTT CAGGTGGGGA CACGACCTTT 000560 000561 TCAGGAAGGC TCAGTAGCAT CTTATAAACT CTATAGCCAA AATCCCTCTG GAGCATCTCC AGAAACAGCT CGGCCAGCAC 000640 000641 CATCACCTGA TGGGGAGGTG GGAGGGTCCA TGAGCATCAG GAAGAAAGAC TGCTTCAGGC CCACAAATCC CAGCCCACAG 000720 000721 CCTCCCCAAG ACTCTTGACA CCTGCCTCAA AAGAGATCCT TTCCTTTGGC CTCCGATCCT CCACAATCCC ATGGAGGGAC 000800 000801 AGGTTTACAC AGCCAGGGCG TGCGATGACA GCAGGTTCTA GGGGGGGTGG AGGGGCCTCT GGGAGATCAG TGTCCGTTTC 000880 000881 CTGCTGTGTG GTGGCCTCTG GAGTTTCTGC GTTCCGTCTA GAAGTGTCTG CTGCTTGCTC CAAGGCATCA GGTGCCTGTT 000960 000961 CAGTAGGCTC CGTTTCCTGT GACAACAGCT GAAATGAGAC CCTCTGGGTC CCGGGATTAG GCCACCTATA TCCCCCGCTG 001040 001041 CTGGCTAAGG CACAGCCTTA CCCCTTGTGC CTCCTGGGTT GGGGGAGCTG CCTCTGCAGC TTTCTGCTGG CACAGGGCCT 001120 001121 CCCACTCCTC CAAAGTAGGC ATGATGGTCC AGACATCCGG CAGGTACACC ACCACTGTCT GAAGCCGCCG GGGGGGTCCC 001200 001201 GGCTGCAGGT ACTGAAACTC GGCAAAGCGC CACCTGCACA TGGCAAAAGG AGGTACTAAC TTCTTTAGTG ACAACTCCAC 001280 001281 GCAGACACCA CGTTCACAGG CAAGGGCTTC AGTTTCCAGT CAGCACTCAA TGAGCACACA CTGCGAACCA AGCTTTGAAG 001360 001361 ACACAACAGG AAAGCTACAG ACCAAGTCCT CAAGAAATGA TCAGTCAGTG GGGAGGCCGC AACCACACAA GCACCCTACA 001440 001441 AGGTGCAAGG ACAACTCCAG GGAGTCTCAA GTGCAGCCTG GTGGCTCAGC CAGATTTTGG CATACACCCC ACCCTACCCT 001520 001521 GAGGCACCAG AGGGGGAAGG AACGGGACTA GGGGGCAGAG AGCTAACCAG CAGAAAGGGG CAGGGACCGG GCCTTCCCAA 001600 001601 CAAAACCTCC CCAACCTGGT GCGTTGGTGC AGCTGAGGCT CAGGAAGCCC ACTCACCACT TGGTACAGCC GCTCAAATCA 001680 001681 ATGCCAGTCT GGGCCTGCGC ACAGCGGATG GCGGTACGCA CCAGCACCTG CGGGTCAGCC TGGGGGTCGA GGCCATCCAG 001760 001761 GGAAGGAGAC CATTCACCCC CAACCAGCAC TGCCTCCTCT TCTTTCCTGC CCAGCAAAAA CTGCAAGAAG AGATCAGGGA 001840 001841 TACAAAACAA AAAACTACAT TACCTGGGTC TCCCACTGCA GGGCAAGGCT GCCACCCATC AGGATGAAGG CAGCCGGAAG 001920 001921 TGGGGAAGTC CACCACACAG TGAGGTCTCT ATCTGCAAAC ATGAACCAGC CACCTCGCTC TCTCTGACTA GTCGTAACAG 002000 002001 CTCTGAGCTG CACCTTCCTC CTGGGTGAAA TGAGGGGTGT TCGGCTCTGA GATGCCTCGT TTTATGCATT CAGGAACAGG 002080 002081 AGCCGAACAC TCAAAACATG ACAGGTTGTG CACATTACCC GTGAATGCAT CTCCTCCTGC TCTCCAGCTC TTACCTTAAT 002160 002161 CTGCTTCAGA GGATGCTCTG GCGTCTCCCT TGGCTCAGCC ATGTCATCCA CAAAGAGCAT GCAACAACGA TACAATTCCT 002240 002241 CCAACCCCGG GGAAGAGAGC AGCAGTACCT GTGCAGGAGG AGACACTCAG AGCTGCCTTC AGCCTCCAGA AATCAGATAA 002320 002321 GTGAGAGACG CCTGTCAGCT TACCTTCGAA CTATAAGCGG GGTCACTGTC TGCAGTGATG GGCTCAGCAC CAGCGTCTGG 002400 002401 AGCTGCCTCC TTTTCAGAAG AGACCTGGAT CCGGCTTGGA TGATGGAGGG AAAAGGGCTG GCTCAGGGGG AAGGCTGATA 002480 002481 GCCAACTCAG ATGCACGGAC AGAAAATCTG AGGGGACCAG GAGGCTGCGG TAACGGCGCT GGAGTTCTAG GAAGTCACAG 002560 002561 ATGGGGCTAC AGGAAGACAG CAAGGGAATC CAGACTGAGC AAAGACTAAA ACATTCGAAA TGAAACCATC AAAGATTTGA 002640 002641 AAAAATGGGC GAATTTTTTT TCAGTCTGAG AACTTTTGAA GTAAGGCACC TCTCAAGGAA GCTAGATCAG ATCTGACCAC 002720 002721 TTAATTTACA AACTCTAGAT GGCAAAAGTC |
Predicted Small Protein
Name | ENST00000521025.1_smProtein_380:586 |
Length | 69 |
Molecular weight | 6454.0617 |
Aromaticity | 0.0441176470588 |
Instability index | 40.3044117647 |
Isoelectric point | 7.99993896484 |
Runs | 13 |
Runs residual | 0.0506756756757 |
Runs probability | 0.032122620358 |
Amino acid sequence | MTARGGRVLTSGASDSVAGPSFCASSLGSLTTSSLMASSSLVASSLAASSFSGSGGDTTF SGRLSSIL |
Secondary structure | LLLLLLEEEELLLLLLLLLLHHHHLLHHHHLHHHHHHHHHHHHHHHHHLLLLLLLLLLLE EEEELEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooo oooooooo |