ENST00000520459.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000520459.1 |
Source |
Gencode19 |
Same with |
lnc-CA2-2:2,NONHSAT127535 |
Classification |
intergenic |
Length |
677 nt |
Genomic location |
chr8+:86436128..86452740 |
Exon number |
3 |
Exons |
86436128..86436354,86436806..86437088,86452574..86452740 |
Genome context |
|
Sequence |
000001 TGTCTCTGTG CTCATGACAA GGACATATCA CCTAACTCTG GGCTCTGGCT CACTTAGTAG CTTCTTTGCC GTTGGACTCT 000080
000081 CACACCGAGA TGTCACCGAG CAGCAGCCTT TCCCAGGAAG TTGTTAAGGA GATGGGAATC CTCATGCCTG CTGCTTTTTC 000160 000161 CCAAATCAGA GGAAGCCCGG GAGCCAGTTG CAGTAAAGTC TTGCCAGTAA CGTTTCTCTT AAGAACGAGA AAGCTACTCA 000240 000241 AAGAAATGAT CTCTTCCTGG ATGTTGTGGT CCACGAATAT TATGTCTGGA ACATCAGAGC CATCTTGTCT CCATGATGGG 000320 000321 AGTTCCATCT AAAGACAAAG TCAAAACCCA GCAGAGGACA CAGCTGAAGG AACACGAGAA AGTGGCATGG AAACGCTGAA 000400 000401 GCCCCAGCAC CGGCAGACCT CAGTTATTGG GGCCAATCAA CCTCTTGTTA CTGTTCAAGC GAGTTTGGAA ACGTTGTCAG 000480 000481 AGACCCACAA CAGAAAACAA CTCAAACAGC AAGGGAGATG TGCCCCTACT GGCCAGTGAA GGAGGAAATG GCTGTGAATG 000560 000561 TGGAATCAGA AATCTGGATT GGAACCTGAG CTCAGCCTTT TACTGGCCAT GGGATCTTGA ACAAGTTACT CAACTGAACT 000640 000641 GAATGTCAAT TTCCTAATCA ACAAGACAGT AAAATCA |
Predicted Small Protein
Name | ENST00000520459.1_smProtein_89:331 |
Length | 81 |
Molecular weight | 8648.0608 |
Aromaticity | 0.05 |
Instability index | 88.64125 |
Isoelectric point | 8.80255126953 |
Runs | 8 |
Runs residual | 0.0388157894737 |
Runs probability | 0.0445592651475 |
Amino acid sequence | MSPSSSLSQEVVKEMGILMPAAFSQIRGSPGASCSKVLPVTFLLRTRKLLKEMISSWMLW STNIMSGTSEPSCLHDGSSI |
Secondary structure | LLLLLLLLHHHHHHHLLHHHHHHHHLLLLLLLLLLLLLLEEEEHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |