ENST00000520259.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000520259.1 |
Source |
Gencode19 |
Same with |
lnc-AC120194.1-1:2,NONHSAT127159 |
Classification |
intergenic |
Length |
2367 nt |
Genomic location |
chr8+:71383369..71397922 |
Exon number |
4 |
Exons |
71383369..71384080,71390328..71390398,71392957..71393543,71396926..71397922 |
Genome context |
|
Sequence |
000001 TTTTCTAAGA CCTCCCTGGC CCGCCATACG CCGATCCTGA ACCTACGAAA ACCCAAGACT GCGGGCACGG TGGCTCATGC 000080
000081 CTGTAATCCC AGCACTTTGG GAGGCCGAGG CGGGCAGATC ACGAGGTCAA GAAGTCGAGA CCAGCCTTGC TAACATGGCG 000160 000161 AAACCCTGAC TCTACTGAAA ATACAAAAAT TAGCTGGGCG TGATGGCGTG CGCGCCTGTA GTCCCAGCTG CTCGGGAGGC 000240 000241 TGAGGTAGGA GAATCGCTTC AATCCGGGAG GTGGAGGTTG CGGTAAGCAG AGATTGCGCC ACTGCACTCT AGCCTGGCGA 000320 000321 CAGAGACTCC TTCAAAAACA ACAACAACAA CAACAACAAC AACAAAACAA AACCTCCCAA GACCCTAGTG GGCAGACACA 000400 000401 CAGCCAGCCA GACATGGAGA GGAGCACATT AGCAGAAGAA GACGCAAGTG GCTGGTCCTC GAGAGGACGT TGAGAGGAGC 000480 000481 ATGCCAGCAG AAGAGCACAC AACGACAGGC ACCGACACAC CACCGGCAGG CCATGCACCA GCAGAATGAT GCGGAGTTTG 000560 000561 ACGGGGCAGT CAGAGAAGAG CCTGGGCCGC CAAGGGGCCC GACTCCAGGG GAAAACCATC TCCCTTCTGG CTCCCCCATC 000640 000641 TGCTGAGAGC TACTTCTACT CAATAAAACC TTGCACTCAT TCTCCAAGCC CACGTGTAAT CCGATTCTTC AGTGTCACCT 000720 000721 CCCAAATGTG GAAATGCATT GTCTTTCTTC TTTCCTAGAC CAGTGGTCCT CAAACTTGAG CAGGTTTAAG CATGGTCATA 000800 000801 GCAGAATCAA TGTGCTCACC CCATCATGAA AAAAAAAATG TGTTAATGAA TTGATTACTA CTTTGAGTGT GCCATATTTT 000880 000881 AAAGACGAAG AGAAACTAAT CAAGTTAGTT TTTATTTGGT CAGAGGCTTG TTTGTGCCTG CTTATCTAAA GTTATAAAGG 000960 000961 CCCCAAATAT GGCTCCGTGT TGCAGAGGGA CTGTCTCTTC TTATATCGAC AGAGCCCATA TTCACAATGT ATCACACTTA 001040 001041 CCTCGATGTA TTGTCTGGAG TTTCCTAGGC TGTGTCCTTT GCCTGGAATG CTCTCTCTTG CTGGCTGGCT TCTTCCCACC 001120 001121 AGCTGTGGCC AGGGCTGCTC CTTATTCCTT CGTCAAAACT CCGTCTGCTG GGTGTGGTGC CTCACACCTG TAATCCCAGC 001200 001201 ACTTTGAGAG GCCAAGGTGG GAGTATCGTT TGAGCCCAGG AGTTCAAGAC AAGCCTGGAC AACAGAGCAA GACCCTGTCT 001280 001281 CTACCAAAGA AAAGAAAAGA AAAGAAAAGA AACAGCCACT TTCTCTTCCA TGAGCCAGTT TATGTTTTCT TCACGGCATT 001360 001361 TGTTACAAAT CACAAATGTG GAGGAAAAAT GAAGGCAAAG CAAAATAACA GGCAAGTCTG AAAACAAAAG TGTTGCCAGT 001440 001441 CACGCTAAGC CTCAGGCACG CATTCTGAAT GAAGCTAAAG TTTAAAGTCC CCTCTGATAG ATTTGTGACT TAAATGTCCA 001520 001521 CACTAGCAAG TGTGTTTCTC ACATGGAGAA GTAGCACGAT TTTATGTCAG GAAAGGGATG AGAACATGCT TCTTGAACAC 001600 001601 ATACAATGCT GAAGACATTT CCTGGAAAAC CATTGGCCTT TGCTTAGGAC AGTTGCATCA CACAGAGATG TTTGTGGTTC 001680 001681 AGATTTATAA GAAACATGGG AACTGAAGCC AAAGCACTAC TTTTGCTCAG TATAACCAGG TGCCAGATCT AAAGTGTTAG 001760 001761 GCAGGTTCCT ATATGTATGT TAGAAAAAAG TTGCCCAAGT TTTGGACAAT TCCTTTTCCA TCTCTCTTAC AAGTCAACAA 001840 001841 ATCGAAGCAA TAAACTATTC TCTGAAGAAA ACAAATTTAT TTGGTTGATT CAAACTTTTA ATGAGACTAT TACTCCCCTG 001920 001921 TGTGCCTTTC CTTTCTCTGG TTCTAGAAAT ACATCTAGAA AGGGGGAAAA TGTTAATATA TTTTCTACTG ACTTTATATC 002000 002001 ACAAATGCTT AGCTTAGAGG GTGGACTCTG AGGAACAGTG TCCTTTCCAA ATATTATAAA ACTTTGTGTT CATTCTGGAA 002080 002081 AAACAAACAA AATTAATCAC AATGATTTCC TGCTTTGGAG CAATGAGAAA TGGGAGGGAA ACTTCACCTT TTCATAGCTT 002160 002161 TTGATGTTTG CACCATGTGA ATTACCCACC CCCAAATTTA AAATACGAAT TTTTGAAAAA GTGTTTACCT CTGAGAAGAG 002240 002241 AAACTAGTAG TGAAGAATGA GGAGCTGTAG ATTTTTAACG ATTCTGATGT ATTTGCATTT TTCCCAATGT TCATGAATAA 002320 002321 ATAAATGTGC ATTCATAATT AAAAAGAATA AACAACCTGG AAAAAAC |
Predicted Small Protein
Name | ENST00000520259.1_smProtein_968:1192 |
Length | 75 |
Molecular weight | 7878.234 |
Aromaticity | 0.0945945945946 |
Instability index | 41.4986486486 |
Isoelectric point | 8.57891845703 |
Runs | 15 |
Runs residual | 0.0600527356625 |
Runs probability | 0.0408467290821 |
Amino acid sequence | MAPCCRGTVSSYIDRAHIHNVSHLPRCIVWSFLGCVLCLECSLLLAGFFPPAVARAAPYS FVKTPSAGCGASHL |
Secondary structure | LLLLLLLLLLHHHLHHHEELLLLLLLEEEHHHHLHHHHHHHHHHHLLLLLHHHHLLLLLL EELLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooo oooooooooooooo |