ENST00000519990.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000519990.1 |
Source |
Gencode19 |
Same with |
lnc-CLVS1-3:15 |
Classification |
intergenic |
Length |
1173 nt |
Genomic location |
chr8+:62791441..62798121 |
Exon number |
2 |
Exons |
62791441..62792336,62797845..62798121 |
Genome context |
|
Sequence |
000001 GGTAGGTTCT GACAGTTTCA TCCATCACAA TACAGGCCTC ACCATGTCAC TGCCTCAGAC TGATAAATGC AAAATGACAG 000080
000081 TCATTCATCC GGTGGAATAG AAGAAGCCAG GGAAAATACA ACATGAAGTC ACTTATGCCA TTTGATATAG CTTTGCAATG 000160 000161 TGTATCTTTT CTCTCCCCTA TCTTTTGTTT TGTTTGTGTA CATGCCAGCA TGATTATAGT CTTTGCAAAA ATATATACAA 000240 000241 GACAACACAT TTCCCTAAAA TAAAAAAGTA TGAATTTAGA AAGATTATAG CTACATTAAA ATGAATTCAG AATCTACTAT 000320 000321 GACATAAATA GAATTAGTTA AAGATTAAGG TTAGAAAGTA AATGTCACTT CTTAACTTTT TCTCTTTCTT GCTATTGAGG 000400 000401 AGCACAATCT AAAATTTGTA GGCAGATAGA GTATAAAAGT AATGTACAAT TATGGCACTT ATACTATTTT TTTCTTTTAT 000480 000481 ACAACAATTC TACAAAAATA ATGACTATAT GTACACATTA AAGGAAACTG TAGATTTACT GAAAAATAGG TATTAATAAT 000560 000561 ATGGATATCA ACAGCTGTGT ACCTTTAATT TAAAAATTAA AAAAATAAAA ATAACAGTAA ACTGAAAGTC TCCATTCTCT 000640 000641 CATCTTCCTT TTCCTATGTT TATTTTTAAA CAAATTATAC TGCATATATC GATATCTATT AGGGTCATGT GTTGACTTAG 000720 000721 CAATAAATTT AATTATTGGT TTAGATATCT TACAGATGTA TGGAATCTCT AATATACACA TTTTTGTTTA ATATGTTACT 000800 000801 GAGAAAGAAG CTCAAGTGAT AGAAATAACA CAGGACAGGA AGTAAGACAG TTCTCGTCTG AAGTTCTTCT CTGACAGCCC 000880 000881 ACAAACTAGT TAATATATGT GCCTGTCACA GTCTCCACCA GAAGCTTTAT CTTACTACAG AGTCCAGATG CATTAAGGCT 000960 000961 GTGTTCGAGC CATGATCTTC CTCTGAAGAA GAAATGAAGA AGAAATTTAT CTTATTTTTG GATATAGTGT TCTTAGTTGG 001040 001041 CAGTTTAATT ATTATTTTTA CTTCATCACT TTGTATACGT CATCGCACTT TCTCCTGGCC TATAAGATCT CTCCTGAGAA 001120 001121 ATTTTACGTT CTACTTTACT GGAACTTCAT TAAATATTAT TTGCATCATT TTT |
Predicted Small Protein
Name | ENST00000519990.1_smProtein_122:262 |
Length | 47 |
Molecular weight | 5278.4557 |
Aromaticity | 0.130434782609 |
Instability index | 44.2826086957 |
Isoelectric point | 9.05755615234 |
Runs | 6 |
Runs residual | 0.0309265010352 |
Runs probability | 0.062827533416 |
Amino acid sequence | MKSLMPFDIALQCVSFLSPIFCFVCVHASMIIVFAKIYTRQHISLK |
Secondary structure | LLLLLHHHHHHHHHHHLLLLEEEEEHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii |