ENST00000518984.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000518984.1

Source

Gencode19

Same with

lnc-HAND1-1:2

Classification

intergenic

Length

1734 nt

Genomic location

chr5-:153863477..153865489

Exon number

2

Exons

153863477..153865103,153865383..153865489

Genome context

Sequence
000001 GGGACCTTGC TTGTATGGAT GAAAATGAAT TTAATAACTG CCAACAGTTG GTTTGAGTTT GAGGCTGGGT TCCACTGTGA 000080
000081 CTTCTTGTTC TTTGAGCCGT GCTCTGGGGC AAAACTCAGC TGCAGCGTGG AAATAGTAAG GCAGAAAGAG GCTGAAATCC 000160
000161 AGAAGGGTGC TGGTAAGATT GACCATGGTA ATGAAGAGGA TCAGCACAGT TTACCGTGTT TGCAGTGTTC TTACTCCACT 000240
000241 CCCGTCTCCT TTCTGATGCC AAGGCTCTTC TATCCATCCT TGACTTTTTA ACAAAGGACT TCCCTCATTA AACTGAAGAG 000320
000321 ACAAAGGAGA CTCCTGAGGG ATTTAGAAAT TCAATGGAAA AAGCAAAAAA AACAAAACAA AAAAACTCTC AGAGCACTTA 000400
000401 ACTTCTCTCC CAAAGGACCA GAGAGCCTGC CAATTCCCCA GCAATGCCAG AGCTAAGCAT TTTCCCAGTG TCAACATTAA 000480
000481 ATCCCTTTTT TGTTTTTCTC TTTTAAAGTG TGTTTACAAT TGACCATTAT GGGAAAGATG ATGGATGTGG CCTGGCCCCG 000560
000561 TTTAAAATAA TAAGGCTAAT AATGATACAG TTGTTTCGTG CATACGGACT CTTTCTGAAA GCCTGTGAGC AGAAGGAAAG 000640
000641 GGTTGAGGAG CCCAGTGTTT TCAACTTAAG TGTAGCCAGC TGCCGATCAT CCCCACGACC CATTGCTAGC TATAACACTT 000720
000721 ATGCTCCGGC AGACTTCGGA ACCTCTTGGC TCCTGCATGC TCTTTTGGAG AAAAGAGCAC AGAAGTTTTG AATGAATCTC 000800
000801 CAGACCCTGT CCCTGAGATA GCAAGGCTTA GATGGACAAG CCTGGAGTGG ACAGCTTGCA TTGTGCCCCA TGGGGACTCT 000880
000881 GCCAGAGAAG CGCATGATCC TTAAGACAGA GATATGGCTC AGTCCTGTAT TCCAGGAGAA AGTAGACTCA ATGTTTGCTC 000960
000961 ATGAAATGTC CCTGCGTCCA GCTCTGCTGG TCGTGTCCCT GGCGAAGACT CCCCACCTAT GTAGCCAGCA GCATCTGTCC 001040
001041 TTGGATACAC CATCCCGGCT CTAGCTTTTC CCCAGTAATC AGCTGGCTTT CGCTGGCAGG AGGACCCAGG AGATAGGTAA 001120
001121 AGTGGGTTGA TTCAGTCCTT GCTGTGGAAT TCAGATTAGA CTGGGAAAGG AAAAAATTCT CCTGACCAGG GATGCAACAG 001200
001201 TCAGGCAGTG AGAATGACCT TCGTGACAAT GAGCCGAGAT AAGCCTCTTG GCATGAAACA GCTCGGCAGG CAATGATCAG 001280
001281 TGGTCTAGGG ATTGGCTACA AGTGGCCCGA CCCGACCCGG GGAGCAACCG AGCACCAGGA AACTAACCAG CATGTGAGGA 001360
001361 ACAAAAAAAA TCTCCCAATA TGCCGAAAAC AGCCTGGTGC ACAGCAAAAC TTCGTTAACA GGCGGCCTGG AGCTGAGTGC 001440
001441 TGTGAAGCTG ACCAGAATGA AATTGCCCTG AAAGCAACGG GACTGGGTAA AAGAAACCGG AGTAAAATCC ACCTGCCTGC 001520
001521 TAGTGTGCAA CTAACCACTG CGAGGGATGG GAGAAGGGAG GGTCTCGGAG GGCCGCAGGG TGGACCGGGA GGAGACAGGA 001600
001601 CTCCTGGTGT TCTGGAGAAC CTGACCGAGC TGCTTCGGGG ATGGGGGAGG GAGGTGTCCA GTGCCTTTTG ATTTACAATC 001680
001681 GCTGCGCCCC AAGCGATCCC ATAAATTTGG GGGCCGTTTT CACCAAAACC GTGA
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Predicted Small Protein

Name ENST00000518984.1_smProtein_581:790
Length 70
Molecular weight 7883.0073
Aromaticity 0.130434782609
Instability index 59.5550724638
Isoelectric point 9.13726806641
Runs 7
Runs residual 0.0378820490745
Runs probability 0.0356070356071
Amino acid sequence MIQLFRAYGLFLKACEQKERVEEPSVFNLSVASCRSSPRPIASYNTYAPADFGTSWLLHA
LLEKRAQKF
Secondary structure LHHHHHHHHHHHHHHHHHHHLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHH
HHHHHHHLL
PRMN -
PiMo -