ENST00000518984.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000518984.1 |
Source |
Gencode19 |
Same with |
lnc-HAND1-1:2 |
Classification |
intergenic |
Length |
1734 nt |
Genomic location |
chr5-:153863477..153865489 |
Exon number |
2 |
Exons |
153863477..153865103,153865383..153865489 |
Genome context |
|
Sequence |
000001 GGGACCTTGC TTGTATGGAT GAAAATGAAT TTAATAACTG CCAACAGTTG GTTTGAGTTT GAGGCTGGGT TCCACTGTGA 000080
000081 CTTCTTGTTC TTTGAGCCGT GCTCTGGGGC AAAACTCAGC TGCAGCGTGG AAATAGTAAG GCAGAAAGAG GCTGAAATCC 000160 000161 AGAAGGGTGC TGGTAAGATT GACCATGGTA ATGAAGAGGA TCAGCACAGT TTACCGTGTT TGCAGTGTTC TTACTCCACT 000240 000241 CCCGTCTCCT TTCTGATGCC AAGGCTCTTC TATCCATCCT TGACTTTTTA ACAAAGGACT TCCCTCATTA AACTGAAGAG 000320 000321 ACAAAGGAGA CTCCTGAGGG ATTTAGAAAT TCAATGGAAA AAGCAAAAAA AACAAAACAA AAAAACTCTC AGAGCACTTA 000400 000401 ACTTCTCTCC CAAAGGACCA GAGAGCCTGC CAATTCCCCA GCAATGCCAG AGCTAAGCAT TTTCCCAGTG TCAACATTAA 000480 000481 ATCCCTTTTT TGTTTTTCTC TTTTAAAGTG TGTTTACAAT TGACCATTAT GGGAAAGATG ATGGATGTGG CCTGGCCCCG 000560 000561 TTTAAAATAA TAAGGCTAAT AATGATACAG TTGTTTCGTG CATACGGACT CTTTCTGAAA GCCTGTGAGC AGAAGGAAAG 000640 000641 GGTTGAGGAG CCCAGTGTTT TCAACTTAAG TGTAGCCAGC TGCCGATCAT CCCCACGACC CATTGCTAGC TATAACACTT 000720 000721 ATGCTCCGGC AGACTTCGGA ACCTCTTGGC TCCTGCATGC TCTTTTGGAG AAAAGAGCAC AGAAGTTTTG AATGAATCTC 000800 000801 CAGACCCTGT CCCTGAGATA GCAAGGCTTA GATGGACAAG CCTGGAGTGG ACAGCTTGCA TTGTGCCCCA TGGGGACTCT 000880 000881 GCCAGAGAAG CGCATGATCC TTAAGACAGA GATATGGCTC AGTCCTGTAT TCCAGGAGAA AGTAGACTCA ATGTTTGCTC 000960 000961 ATGAAATGTC CCTGCGTCCA GCTCTGCTGG TCGTGTCCCT GGCGAAGACT CCCCACCTAT GTAGCCAGCA GCATCTGTCC 001040 001041 TTGGATACAC CATCCCGGCT CTAGCTTTTC CCCAGTAATC AGCTGGCTTT CGCTGGCAGG AGGACCCAGG AGATAGGTAA 001120 001121 AGTGGGTTGA TTCAGTCCTT GCTGTGGAAT TCAGATTAGA CTGGGAAAGG AAAAAATTCT CCTGACCAGG GATGCAACAG 001200 001201 TCAGGCAGTG AGAATGACCT TCGTGACAAT GAGCCGAGAT AAGCCTCTTG GCATGAAACA GCTCGGCAGG CAATGATCAG 001280 001281 TGGTCTAGGG ATTGGCTACA AGTGGCCCGA CCCGACCCGG GGAGCAACCG AGCACCAGGA AACTAACCAG CATGTGAGGA 001360 001361 ACAAAAAAAA TCTCCCAATA TGCCGAAAAC AGCCTGGTGC ACAGCAAAAC TTCGTTAACA GGCGGCCTGG AGCTGAGTGC 001440 001441 TGTGAAGCTG ACCAGAATGA AATTGCCCTG AAAGCAACGG GACTGGGTAA AAGAAACCGG AGTAAAATCC ACCTGCCTGC 001520 001521 TAGTGTGCAA CTAACCACTG CGAGGGATGG GAGAAGGGAG GGTCTCGGAG GGCCGCAGGG TGGACCGGGA GGAGACAGGA 001600 001601 CTCCTGGTGT TCTGGAGAAC CTGACCGAGC TGCTTCGGGG ATGGGGGAGG GAGGTGTCCA GTGCCTTTTG ATTTACAATC 001680 001681 GCTGCGCCCC AAGCGATCCC ATAAATTTGG GGGCCGTTTT CACCAAAACC GTGA |
Predicted Small Protein
Name | ENST00000518984.1_smProtein_581:790 |
Length | 70 |
Molecular weight | 7883.0073 |
Aromaticity | 0.130434782609 |
Instability index | 59.5550724638 |
Isoelectric point | 9.13726806641 |
Runs | 7 |
Runs residual | 0.0378820490745 |
Runs probability | 0.0356070356071 |
Amino acid sequence | MIQLFRAYGLFLKACEQKERVEEPSVFNLSVASCRSSPRPIASYNTYAPADFGTSWLLHA LLEKRAQKF |
Secondary structure | LHHHHHHHHHHHHHHHHHHHLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHHHHLL |
PRMN | - |
PiMo | - |