ENST00000518129.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000518129.1 |
Source |
Gencode19 |
Same with |
lnc-CNBD1-3:1,NONHSAT127585 |
Classification |
intergenic |
Length |
647 nt |
Genomic location |
chr8+:88986393..89031341 |
Exon number |
6 |
Exons |
88986393..88986535,89015955..89016031,89022371..89022434,89022745..89022931,89024312..89024429,89031284..89031341 |
Genome context |
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Sequence |
000001 TCAGTGTGTC AGTCACACCG GGATTCATTC ACTGAGTTCC GGGAGCAAGG CAGCTTTTCA AGGCTGGGCA CTAAACAGGG 000080
000081 GGAGCTTTGT GAGTGCCTAG ACTCCTCTGC CGGCCACCTG CTCTTCCTCT CCTTGGCTTC CACGAAGAAA GCTGCATGAG 000160 000161 AGCAGGGAAT TGCTTTGTCC AATGCTAATC ACTAAAGCTT AGAATACTGC TTGTTACATG GGCCAGAAGT CAAGAATAGG 000240 000241 AGAGCAGCAG AAAACCACTA AATATGACAG CCAGCTTCAC ATGGTTAGGT GGAAACATCA TTGATGCAGG ATTTTTCTTT 000320 000321 GTCTCCTTAC CAGTTGGGGA CCTCTGGCTG GTGATGTTAC CTGCCACAGG ATGTGCCCTG CCCAATCAGC TTGCCAAGTC 000400 000401 TAGCTTGTGC ACTGGTTCCT GAGTTCTTGT CCTGTGCCCA AGAAGAATGA GGATGTGCTG ACCATTGAAG GAGTCTTGTT 000480 000481 CTGTTGACCA GGCTGGAATG CTGTGGTGTG ATCTCGCCTC ATTTCAACCT CCACCTCCCA GGTTCAAGCG ATTCTCCTGC 000560 000561 CTCAGCCTCC CGAGTAGCTG AGACTACAGA GCCACCTCTT AGTTGGACTA TTTCACTGCA ACAGTCCCCT TCAGCTGGTG 000640 000641 AGTCTCT |
Predicted Small Protein
Name | ENST00000518129.1_smProtein_263:421 |
Length | 53 |
Molecular weight | 5420.3036 |
Aromaticity | 0.115384615385 |
Instability index | 46.9980769231 |
Isoelectric point | 4.20709228516 |
Runs | 11 |
Runs residual | 0.0611690569318 |
Runs probability | 0.0653353888648 |
Amino acid sequence | MTASFTWLGGNIIDAGFFFVSLPVGDLWLVMLPATGCALPNQLAKSSLCTGS |
Secondary structure | LEEEEEELLLLEELLLEEEEELLLLLEEEEEELLLLLLLHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |