ENST00000515728.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000515728.1 |
Source |
Gencode19 |
Same with |
lnc-PPP3CA-3:1,NONHSAT097565 |
Classification |
intergenic |
Length |
824 nt |
Genomic location |
chr4-:101581436..101596270 |
Exon number |
4 |
Exons |
101581436..101581826,101586804..101586917,101595176..101595428,101596205..101596270 |
Genome context |
|
Sequence |
000001 CTCCCCTGAA TTCATTTGCT GTGGCAAATA TGGCTTCCTT AAAATCTGCT GTTTATGAAA ATACAGGACA CAACAAAAAG 000080
000081 ACAGCTGTCT GCAAGTCATG AAGACAGCCA TTACCAGGAA CCAAACTGAA TGGTACCTTG ATCTTGTGCT TTTCGGTCTC 000160 000161 GAGAGCTGTG AGAAACAAAT GCCTGCTGTT CAAATTGTCC AGCCTATGGT ATTTTGTTAC GGCAGTCTGA GCTGACCAAG 000240 000241 ATAACCGGAA ACCTAGAAAA AAAACTGAGA GACTAGATAA CACATGCTCC AGAAAAAAAA GTACTTGATC CAGAAAAAGT 000320 000321 TGAGGAAGGA GATATCTTTT TCAGTTGTGC GTCAATTTCA GTATGTTGCC TGCAATAACA AATAAATAAT TGATGAACTA 000400 000401 AATGGACGTT ATGTCATATA AACTCTTAAT AAGAACACCT ATGAATATTT ATGAAGAGCA TAATTTTACA GAGGAACACC 000480 000481 CAAGTAATGG TCACAGGAAT TGAAGAGCTT GCAAGGGTCA AGCGCTAATC AGTGATGGAA CTTGGTTTTA AACTCCATTA 000560 000561 TTTCCTGCAG CAGAGTCTAC ATCCTCAAAT GTTTCACCAT GCCATCTACA GTCTGATGTG CTTTCCAGAT TTCTCACCAT 000640 000641 TCCACTTGAT CTCCTTTAAA TGACTTTGAT TTGAGAGTGT GCATCTTCAA ATATAGTGCT CAGAACTGGA TGCAATGCTC 000720 000721 ACAATATCAT GTGACCAGCA CTAAGTCGAT ACAAGTTTAT TCCTTTGAAT TTGTCCTGGC GTTTGACAAG GATATTGTGG 000800 000801 ATATTAAAGA TATTTATTTC ACAA |
Predicted Small Protein
Name | ENST00000515728.1_smProtein_401:502 |
Length | 34 |
Molecular weight | 4004.4444 |
Aromaticity | 0.0909090909091 |
Instability index | 56.9787878788 |
Isoelectric point | 5.77337646484 |
Runs | 6 |
Runs residual | 0.00230566534914 |
Runs probability | 0.0443090148974 |
Amino acid sequence | MDVMSYKLLIRTPMNIYEEHNFTEEHPSNGHRN |
Secondary structure | LLEEEEEHHHLLLLLHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |