ENST00000513875.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000513875.1 |
Source |
Gencode19 |
Same with |
lnc-C4orf33-1:1,NONHSAT098296 |
Classification |
intergenic |
Length |
1777 nt |
Genomic location |
chr4+:130692814..130876523 |
Exon number |
17 |
Exons |
130692814..130692842,130701165..130701254,130724147..130724270,130728159..130728303,130733157..130733220,130733817..130733915,130734829..130734940,130746495..130746607,130755365..130755479,130758526..130758580,130783723..130783923,130821693..130821809,130829789..130829858,130870232..130870292,130874429..130874494,130875533..130875731,130876407..130876523 |
Genome context |
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Sequence |
000001 CTTTGGAGTC TAGCTAACAC AGCATCTTGG ATGCACTCCT AAGAGAAGAC TACCTGAAAG GCGTGTACAC TGGTCTAGCA 000080
000081 GTTGAGATCA GCTAGTGTTC CATCTATCTT CTGTCATGTG GAGGAGTTCT TGCTCTGTCA CCTAGTCTGG AATGCAAGGG 000160 000161 CACAATCATA GCTCACTGCA GCCTCATACT CCTGGACTCA AATGATCCTC CTGCCTCACC CTCCTGAGTA GTTGGGACTA 000240 000241 CAGGCTATAC TGGTTATTGT GGATCCAAAA ATCCTAGGAC ACAGACTTTG CCCTCAAATT ATTTACTGCA TAGTGGGTGG 000320 000321 CCTGAAAAGC AAACATAAGC ACTAAATATG GAAAAATGCA AAAGGCAATG GGACCATAAA AGGAACAGAT CTCTTCTAAG 000400 000401 ATGTCTTGAT CGACTGACCC CAAAGCCAGA GGGTACCAGG TCAAAAAGCA AGAAAACAAA CAATACTGAC ATTAGAGAGA 000480 000481 AGCAAAGTTT CTATAGAAAA CCTATTACAC TGTGGTATAA ATCAAGATGA ACCTGCAGAC ATCTATTTTA GTTTGGAAGT 000560 000561 CTGGAAAAGT TCAAGATTGG CCATCTGCAG CTGGTGAGAG CCTCAGGCTG CTTCCCCTCA TGGTGGAAGG TGAAGGGGAG 000640 000641 CTGGTGTGTG CAGAGATTAC ATGCTTTTCT AGGTCATCAT TCTAGGCTTT GTTGAAGCAT GCATTTTTGG CATGAGGGTG 000720 000721 GCAGCCTTTG CACTATGTGC ATGGCTGAGG AGTTAGGATC TGGAGGGTGA TGAAAGCAAA GGTGCTGCTG GTTACTCTTG 000800 000801 GTTCATCTAG CAATAGATGA TCTGAATGTT AGAGTTCGCC AAATATTGTT CCTGGGCAGT CTTTGCTCTA CCAAATCAAC 000880 000881 TTTCTCCATG GGGGAGCTAG AAGTCACCCC ACATTCTCCG CCATGGCCAG CTCTACATTC TAAGAGAACC AATGGCTCTA 000960 000961 CCCAACATAT TCTTCTCACC ACAGATGACA AAGACACAAG GAGCCAAGAC AGATCATTCA AGCATATTCA TTGCCTCTAT 001040 001041 CTTCATCCCA TTAAATAACA TCCCGCCAAC CAAAGCAAGT TATCTGCATA AGAATAAATA TTCCACCTAC TCTACTGCAA 001120 001121 GGCCCTGCAA GAGTCATGAG ACAAAAGGAT CCTCTGTGGA CAGCACCCAA GATGGAAACA ACTGACAGTC TATGGCCAGG 001200 001201 GCTATACTCT GGTGAAACTG AAAGGTGTCT GCATGGAAGT GTCTGACTAC CACCATCCAC TCAGGCAAAT GCATTTGTTT 001280 001281 CCCTCTATTC ATTATTAGAA GAGAGGAGAT TACATACCAG ACATATACCA ATAGGTTTTC TCTTCATAAT ACCTACGTCA 001360 001361 TCTAGTAGCA TAACATAAGG CAGAATCCTT CAAAGATTTT CACCTGAACT TTTCTTGAGC ATCTCTAGAC AGTCACATGC 001440 001441 AGAATAACAA CTGGGTTTTA GGTGTACCAA GTTCTTAGTA TGGAAAAAAG ATATCCTACA AAATTTTGTC TCTACACATG 001520 001521 TTGAAGTTCA TCTCTCACCC CTCTCTACTC TCTTACTTAT GCTTCAAGCA AATGGAATTA CTTTTTTTCA TACTGAGACA 001600 001601 TTAAAACAGG AAATCCTTCT TCCTAGGACT CCTGTTCACC ACCACTACCT CTACACATAG CAGATCCACG TAAGACACTT 001680 001681 GCATCCAAGA CAAGTCAGAA TGATTACATA TGAAAGTTTT AATTGCACTG TATGGGGATA TTGCTGTGTT GTGAATTAAA 001760 001761 TAAGAATTCA TATTTTC |
Predicted Small Protein
Name | ENST00000513875.1_smProtein_347:529 |
Length | 61 |
Molecular weight | 7438.5472 |
Aromaticity | 0.0833333333333 |
Instability index | 65.8068333333 |
Isoelectric point | 10.6216430664 |
Runs | 10 |
Runs residual | 0.0169326241135 |
Runs probability | 0.0473591238296 |
Amino acid sequence | MEKCKRQWDHKRNRSLLRCLDRLTPKPEGTRSKSKKTNNTDIREKQSFYRKPITLWYKSR |
Secondary structure | LLHHHHLLLLLLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHHHEEELLEEEEEELL |
PRMN | - |
PiMo | - |