ENST00000512246.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000512246.1

Source

Gencode19

Same with

lnc-SAP30-5:15,NONHSAT099275

Classification

intergenic

Length

883 nt

Genomic location

chr4+:174451609..174462981

Exon number

5

Exons

174451609..174451690,174452118..174452229,174455064..174455273,174457999..174458121,174462626..174462981

Genome context

Sequence
000001 GGATAATGCA AGTGTTTAAC AGATGCTTCA CTATTAAAAT ATTTTCCCCC CAAGTCTCAA ATATTGAAGA ATCTCTAACC 000080
000081 AGGGACACCA GTCCCTACGA AGACCTTGGG CGATTTTGAA GTGCGGGCAC CTCGATTCCC CGAATCTGTA GTGTGGCTGG 000160
000161 TATCGGTGTT CCCCTGGTTT AACTAGCCTG TTTGTGGAAG TGACTCTGAC CGTTCCCTTA AGAATCTTTA ATGCTCTTAC 000240
000241 ATGAGATGAG CCTCAGAACA AGCTAAGAAC CATCGAAAGA ACATCAAGCC TGGAAGGTGA CAGAAGGAGC AATGTGTTCT 000320
000321 TGAAGATGTC ACCTCAGCCC ACCTGCTCCA AGGACAGTGC TTCTTGCGAC ACTCTGATAG CTCTGCATTC TTTTCTGTAC 000400
000401 CAGGAAGGCA CAGATCATTC ATGGGGATGT ATAACCGAAA CCAGTCCTCT CCACCGCCTG GGGATCTTCA CTTTCGCAGT 000480
000481 CTACGACTGC CTGTGACTCC AGAAAGACAA ACTGCAGATT GGCCAAGTGC CTTTCAAACT GTTTTTTACT GGATGAAGAA 000560
000561 ACTCAACCAA GAAAATATAT GTCGATTCTT GTATATGGGA CAATATTAGC TGCTGTGATT TTTAATACTA GCATAAAATA 000640
000641 TAAGAATCTT TTTATTACTG TGATATTGTT TTTTCCTAAA TGAATGCATA GTGTAACAAT TGGTGTCAAA AAGCATTGAA 000720
000721 TTTTTTTCAG ATGGATTAAG CTGGAATAAT AAAGTATATC TATGAGATGA TTTCTGTAAA CTCTGACTTG CTGAGAAAAA 000800
000801 AGTGAAAAAG CTTTTTCTGG AAGAAACATG GCAACTTAAC CGTTATTAAT CTGGACTAAA TAAAACAGGA AACTGCTTCT 000880
000881 TTA
[back to top]

Predicted Small Protein

Name ENST00000512246.1_smProtein_5:118
Length 38
Molecular weight 4369.885
Aromaticity 0.135135135135
Instability index 64.8567567568
Isoelectric point 4.93572998047
Runs 7
Runs residual 0.009422266303
Runs probability 0.0442627501452
Amino acid sequence MQVFNRCFTIKIFSPQVSNIEESLTRDTSPYEDLGRF
Secondary structure LLEELEEEEEEEELLLLLLHHHHHLLLLLLLLLLLLL
PRMN -
PiMo -