ENST00000509950.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000509950.1

Source

Gencode19

Same with

lnc-PHB-1:1

Classification

intergenic

Length

1754 nt

Genomic location

chr17-:47535223..47539111

Exon number

3

Exons

47535223..47535500,47535951..47536098,47537784..47539111

Genome context

Sequence
000001 AGTTGCAATG CCCCAGTGAG GCAGTAGACT GACCTCACGT GACTTTTGGG AATGAACACT GAGACCATCA ACCCTATCAA 000080
000081 TGAGGGTTAT AAAAACAACA ACGAAGTACC ACCTGACAAC TTCAAATTAT TTATTGATTC CTGAAAAGGA AAATGAAAGG 000160
000161 AAGCTGGCCA AAGCCACGGA GTGCCAGTTG AATAAGTTAT CAAGAGTCTT CTTGGATTGA CGATGCGGCT CCATTTGCAG 000240
000241 CACTTAGCAT CTTCTGCCTT GGAGGAGAGC TCCTGGTGGG CGCTCAGCCC ACCTGCTTCA ACTGCAAGCT CACTGAAGAC 000320
000321 AGACACCCCA GTTTAGCATG GTGCCCGGCT GGCAGGAGGG CTCTTTTCCT CTTTTGCAGA CTGTTGATGC AGCCTCCTAA 000400
000401 GTACCCTCTC TGCCTCCCAT CTTGGCTCCT CCAGTCCACC CTACAGTCTT CCTAAGACAC TGACTGATCG GATCCTCTGA 000480
000481 CTCTGCTGAA ATGCCTCAGG GACTCTCCAC AGCTACAGCA ATGACTTCCC AAGAGTGCCC TGGGGCACAA CAGTCCCAAG 000560
000561 AGATGCTCCT GAAGAAACAG CTTAGGGCCA AAATAAATGT AGAAAATGCT CTTTACTGAA GCTCCCCAGC CCTTGGAGAT 000640
000641 TCACATGCCC TATGAGCATA ATCAGGGATC TGAGAAGTCC TGCAAGGTTA GCATGCAGCC AGGTTAGCAT ATTTGATACA 000720
000721 GTTTTCCGAA GCTTTTTCCA TCACAGGCAA TCTTTTTGCA AGCAATGTCT ACAAACAGCC CAAGACATAG TCCCACAGAA 000800
000801 CATACTTTGG GAAGCAGTGA GCTGCATGGT AGAGCCTGAA GTTCAGTCGG GGAGGGGAAG GGCAGCGGTT GTGTGATGAG 000880
000881 TCCCTGCCCA AGGGAACATG GTCTGTGGGA GACTGAGATG GCTCAGGGTG CAAAAGGGAA GGTGCTGGCT GTGTGCAGAC 000960
000961 ATGACAGAGA CTTGTGGGTC AGGAAAGTCC ATCAGCAGCT CTCCTCTCTG CCTTCAGTCT CTTCATCTAG ACACAGATGT 001040
001041 CCTGGGCACG TGTGTGTTTC TAGACCTGGC ACATCCTGAG TGAATCTTGG CCTCTTAATG AACCCAGCAG CCTCCTGCTG 001120
001121 CAGAGTCGCT GAGATGCTGT GCAGTTATGA CATATCCTCC CACCACAAAA GAACATTCCA GCTTGTCCAG GGGATGGTCA 001200
001201 CGGAGGCCAG TGCTCCACCG GATCCCCAGC AGCAGGAGCC TTCTGTGGTA GAAAAAGCAT GGGCATCGGA GGCCGAGTCC 001280
001281 GGGATTCCCA TCCTGATCCA TCACTGACTA GGTGCTGTGG GGCCTTGGAG ACGTGGTTTC AACACATTGG CCAGGCTGGT 001360
001361 CTCGAACTCC TGAAGTCGTG ATTCGCCCGC CTTGGCCTCC CAAAGTGCTG GGTTTATAGG CATGAGCCGC TGCACCCGGC 001440
001441 CCAGGTTGAG GTTTTTGAAG AGCATCACCT TTGCAGGTGA GAAACGCTGC AGGCAGGAAT CCAGCCGTCA TTCTTGACAC 001520
001521 CACCCTTATC TAATCCCCTG CCAACTGCTA GTTCCAGCCA GCATCAGCTC TCTCCTGGAC CACTGCCACT ACCTCCTAAC 001600
001601 AGGATTCCCA CCTCCACCTC CGCTCTCATT ACCCCCGATC TGCAGCCAAC TTGAGATGAT CATATCACCC CCTCCACACC 001680
001681 CAACACAACT CCAAAATGCA AAGAGGCTTC CTCTGTTCTT GGATCAAGGG TTTAAACATG ACCTAGAAGC CCTC
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Predicted Small Protein

Name ENST00000509950.1_smProtein_1097:1306
Length 70
Molecular weight 7546.4709
Aromaticity 0.0434782608696
Instability index 62.2565217391
Isoelectric point 5.34991455078
Runs 11
Runs residual 0.0200889654183
Runs probability 0.0405003934416
Amino acid sequence MNPAASCCRVAEMLCSYDISSHHKRTFQLVQGMVTEASAPPDPQQQEPSVVEKAWASEAE
SGIPILIHH
Secondary structure LLLHHHHHHHHHHHHHLLLLHHHHHHHHHHHLLEEELLLLLLLLLLLHHHHHHHHHHHHH
LLLLEEEEL
PRMN -
PiMo -