ENST00000509350.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000509350.1 |
Source |
Gencode19 |
Same with |
lnc-MTBP-1:1,NONHSAT128456 |
Classification |
intronic(AS) |
Length |
1973 nt |
Genomic location |
chr8+:121773493..121789072 |
Exon number |
5 |
Exons |
121773493..121773612,121778018..121778104,121780899..121781938,121787515..121787766,121788599..121789072 |
Genome context |
|
Sequence |
000001 AAGACAACAG GGACCCCCTA AAAACAAGGA CACCAGCAGA AATTTTAGCC TCTGACACCT ACAGTTACAG CAAACAATAA 000080
000081 ACACAGACTA ACTTCTAGGC AAATAAACAA ACAAGAGATG GAGCACATTC AAGTCACAGC AGTGGCCATG ATAGCTAGAG 000160 000161 TTTCAGAAGC CATTCTGTGA CCTGGAGCAT GGAAAGAAAG TGCTAAGATG TTGAAAGAGA GAGAGGATGA CGTCCTGTGA 000240 000241 ATGTGCTTCA AGTCCTTATC AGCTTGTTAC TCTGGAAACG TGGTGAATCT ATTCCGAGCC TCAGTTTTCT TCTCTGCAAA 000320 000321 AGATGGCCAA TAATCCTGGA GTTTTGGATG GTATGGGGAA GAAGAAAATG CCTGATGCAT CCCTGCCCTC CTCACATTTT 000400 000401 TAGAAGAGAC AGAGACTTGA TCTACTTCTT AGGAAAGGGC AAGACTGAAA GAAAATTCAG GTCCATCTCA GTGGCTCCCC 000480 000481 ACCACAGGTG GAGAGGCTAC TACTAATCAG ACTGATGCAC ACTACCAGTG GGTGCCTTAA AAGAACGACA GACTCCCAGC 000560 000561 CTCTCTCTTG GCCTGTGGAC ATAGACCTGT TTGCCTCACC TGGCAGGTCC AGCCAGGCGT CTTCTCTCTC AGTTCCAGAC 000640 000641 AAGGCATCTG ACGGTGTGGA TCAGCCAGTT TAGACCCAGG GTCCCTCTAT TTGAAATTCA GGGCAAAAGG GGTAGAACAA 000720 000721 GCCCCCATTT CAGCTGGAGG AAGTGTGGCT TTTGGCACAG TTTTAGCACC AATAGAGTTG ATTATTTTGA TCATCATTTG 000800 000801 GCAATAGTTC CTTATATCCT TTTTTCAAGC AGATTTCTGG ACAAGAGGAA CCCAGTCAGA ACCTTTTCCA GAAGTATTAA 000880 000881 GTAACATAGT AAATATGACC GCACCTGCTT TGACACTCCT CCTATTGACA AGTGAGTCAA TTTCTCCTCT TCTTTAATCT 000960 000961 GGAGGAGCTC TGAGACTGCT TTGACCAGTG GAGCACATGG CAGAAATGAT GTTGCTCCAG TTTCTAGGCC CAGACTTTCA 001040 001041 GAGACTAGCA GCTTCCACTT CCTGTCTCCT GGATGCTCAT TCTGGGTTGG GGGGGCGGTG GTGCCAGCAG CTATGTAAGA 001120 001121 AGTCTCACTA TCTGAGATCA CCATGCTGGA GGAAGCCCAG GTCAACCACA TGGAGACACT GTACAGAGGG AGCTGCTCCA 001200 001201 AGAATCCTCA ACTGATCCAG CCATCTCAGC CTAGGGGTTG CAGTCAGGCT TTGAATCCCA GCGACATTCA TTCCGCAACA 001280 001281 TACTAACCAC ATCCTGGTGA TCCCAGCTTC AGAGAGGAGA ACACGGGGAC TTGAGTTCAC TGTTGCGGTG AAGTCCTGCT 001360 001361 CTGGCCCCAG GCAGAAGTCA AGATCAAAGC TCACACTGCA AATATTGTGC TGATTAAAAC CAAACTTTCT GCTTTTGATG 001440 001441 TGGGCCAACC TCCATTGCTG GTAGGAACAA AGGAGGAGTA TAGCAAAAAG ATACTAGCAA TGTTTTCTTA TCCTGGGTTA 001520 001521 CCACCTACAT TGTTTCTTGG GGAGAAGGAT GCCTGACTCC TACAGAGTAA TGAGACACAA GGAGGGTGCC TGAGCCATTT 001600 001601 CTACAGACTC CAAGAGGTTC TAACCAGCCC AGGTCACTTC CACTTTTGAG ACCTGTGGAC ACGTTATGAT GTTATGAAAT 001680 001681 GCCAGAGCAG GATTACCAAA ACTCTCACAT ATTTGTAAAT GCTTGTATTT TGCAAATGAC CCTTATTTAC AACCAAAATA 001760 001761 AAACTTCGTT TGGGAACAAT GTCAAGAGTC TTAATGTGAG GCCTTTTATG AATACAAGGC CTCCTGCTAA ATGGCCCACC 001840 001841 TGCTTCCCCC TCATAAGCCT GGTCATATCA GTACCCCCAG GAGCTTGGCA CATGGTTTTC ACATGGTGAA TAATGAAAAA 001920 001921 GTACTTCCTA AATGAATAAG TGCACACATG GATGAATAAA CAATCTACAT GTC |
Predicted Small Protein
Name | ENST00000509350.1_smProtein_347:505 |
Length | 53 |
Molecular weight | 6456.5704 |
Aromaticity | 0.153846153846 |
Instability index | 78.05 |
Isoelectric point | 10.9474487305 |
Runs | 10 |
Runs residual | 0.041938287701 |
Runs probability | 0.0439674969087 |
Amino acid sequence | MVWGRRKCLMHPCPPHIFRRDRDLIYFLGKGKTERKFRSISVAPHHRWRGYY |
Secondary structure | LLLLLEEELLLLLLLLLEELLHHHHEEELLLLEEEEEEEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |