ENST00000508933.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000508933.1 |
Source |
Gencode19 |
Same with |
lnc-RAP1GDS1-4:1,NONHSAT097479 |
Classification |
intergenic |
Length |
537 nt |
Genomic location |
chr4+:98288077..98411315 |
Exon number |
6 |
Exons |
98288077..98288139,98360505..98360572,98362561..98362710,98384696..98384743,98410925..98410963,98411147..98411315 |
Genome context |
|
Sequence |
000001 AAAAATGAGC AGAGAACCCA GCCAAGTTGT GACTGGAGAC TCCTGACTTA CGGACAATAA GAGAGGAAAT GTCTTTTGAA 000080
000081 AGCTTCACTG ACGCCAAGCA GATTTCTTCC AACAATTTCT TGCTTCTTGT GATGTTAGAA GAGCAATTAT GTTCCTGTGA 000160 000161 GCAGCTGATG GAGGACATTA TCAACATGGA AGTACTTCTT TGTGAGAGAA CTGTCAGCTT ACGTTTATAT TAATAGATAT 000240 000241 TACCTTTGGA CTATATCTGT GGGAAAAGAA AAGCTATTTC AGTCCAAGCG ATTCTCCTGT GTCAGCCTCC CAACTAGCTG 000320 000321 GGATTACAGG TCTCCTTCTG AAGAGGGTGA AGATCTCTAC CCCGAAATAT GGTCAAGACC TCATAACAAC ACCAAGAAAT 000400 000401 CCAGGGAAGA TTTATTTTCC CACCTCTGTG TTGGCTCAAG AAGAAAAGAA TAGATTTCAA TGGCAGCTAG TATAAATATT 000480 000481 ATCTAGAAAT ATAACCTAGT AATTTTTTAA AAAATACAAT CCAATATTAC ACATTGG |
Predicted Small Protein
Name | ENST00000508933.1_smProtein_68:232 |
Length | 55 |
Molecular weight | 6322.3258 |
Aromaticity | 0.0740740740741 |
Instability index | 53.0203703704 |
Isoelectric point | 4.09991455078 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.0289603328819 |
Amino acid sequence | MSFESFTDAKQISSNNFLLLVMLEEQLCSCEQLMEDIINMEVLLCERTVSLRLY |
Secondary structure | LLLLLLLLHHHHHHLHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHLEEEEEEL |
PRMN | - |
PiMo | - |