ENST00000508823.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000508823.1 |
Source |
Gencode19 |
Same with |
lnc-IRX2-4:1,NONHSAT100129 |
Classification |
intergenic |
Length |
768 nt |
Genomic location |
chr5-:3496343..3504118 |
Exon number |
3 |
Exons |
3496343..3496971,3497465..3497525,3504041..3504118 |
Genome context |
|
Sequence |
000001 GGGGCTCTTG CTGGGCCTGC GGAGGAGAGC AGGTGCATTT TCAAGAGAGG AGATACCCAT AAAAAATTCA GGAAAAAGAG 000080
000081 TTTCACTCTT GTCTTCCAGG CTAGAGTGCA ATGGGGCAAC TGCAACCTCC ACCTCCCAGG CTTTCGTACA TTTTGCTATG 000160 000161 AGTTGTCTTG CGGTTTTCAA TGTGGTTTTC TATATGGTCC ATTGATCTTC TTGGAGTGTC TTCTCTGGAT ACAACTACAT 000240 000241 ACCCTGATAT ATCAGCGAGG ACTGTCCAGT CTGCTCATAG GAAGTTGTGT GACTCCAAAG CCTGGACCTC ACAGTTCATT 000320 000321 CATCAATCTC TGCCATACTT GTGGACTTTC ATCCCACCAT GATATTCATG TCATAGTATT CGGCAGTGCT CAAGAGTATC 000400 000401 CCAAGAAATA ACTGTGTTTT TATTCTGTGT AGCTTGGAAC CGCCTTTTCT ATATTGTGGT CCAAAATGTT TCTCCGTCTA 000480 000481 TAAAATTGAG AAAATAATAT GTCTCATCTC ATTTGTTCCC CTTTTGTCCC CAAGGATCAT AGTCCTAATA TACCTGTAGT 000560 000561 TCAATATCTG AAGAGGATTC TTTTTCATAT ATTTTTTACA ATTTTCTAGT TTTAAATTTG GGCATGTTGG ATTTTTCAGG 000640 000641 GTGTGCCTAA CAAGATTTTT GCTAAAACAA AAGTATCAGT GCTGTTCATT GGATTTGAAT ATAATACAGG CTCTTATAAC 000720 000721 ATAATATTTG AAGTGTCCAA GATACAATCC AAATCTACTT GACATAAA |
Predicted Small Protein
Name | ENST00000508823.1_smProtein_179:361 |
Length | 61 |
Molecular weight | 6944.8539 |
Aromaticity | 0.15 |
Instability index | 40.5183333333 |
Isoelectric point | 6.69049072266 |
Runs | 9 |
Runs residual | 0.000265957446809 |
Runs probability | 0.0391077351861 |
Amino acid sequence | MWFSIWSIDLLGVSSLDTTTYPDISARTVQSAHRKLCDSKAWTSQFIHQSLPYLWTFIPP |
Secondary structure | LEEEEEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLHHHHHHHHHLLLLLLEEELL |
PRMN | - |
PiMo | - |