ENST00000507062.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000507062.1

Source

Gencode19

Same with

lnc-SAP30-5:4,NONHSAT099260

Classification

intergenic

Length

4273 nt

Genomic location

chr4+:174451522..174463082

Exon number

4

Exons

174451522..174451690,174452118..174452229,174457999..174458121,174459214..174463082

Genome context

Sequence
000001 GATTGGCTAC CTCCTCATAA CCATAAGATA ATTAAAACTT GGCGGGGGGG GGGGGCAGGG TTAAAAAAAC TTTTTTTATC 000080
000081 AGTCAGAGGA TAATGCAAGT GTTTAACAGA TGCTTCACTA TTAAAATATT TTCCCCCCAA GTCTCAAATA TTGAAGAATC 000160
000161 TCTAACCAGG GACACCAGTC CCTACGAAGA CCTTGGGCGA TTTTGAAGTG CGGGCACCTC GATTCCCCGA ATCTGTAGTG 000240
000241 TGGCTGGTAT CGGTGTTCCC CTGGTTTAAC TAGCCTGTTT GAAGGCACAG ATCATTCATG GGGATGTATA ACCGAAACCA 000320
000321 GTCCTCTCCA CCGCCTGGGG ATCTTCACTT TCGCAGTCTA CGACTGCCTG TGACTCCAGA AAGACAAACT GCAGATTGGC 000400
000401 CAAGCTGCCT GAAGACCCAG CCCGACAGCG ATGCCTGTCA GCCCGCGTCG CCCACCAGGG CAGCTGCTCT CCCAACTCGC 000480
000481 ATGGGGGGCA CCACCCCGCC TCGGTGCCCT AGAGCTGAGC GCAGCCGCGG CTCCACGGGG ATCGCCAGGG CCTCAGCCCT 000560
000561 CGCGGCCGGC GGCGCGGGAG TGTTGCGGGG CAGGGACCAG AGCGCGATCA GAGCGGCCAC CCCCGATTTA GGTCGCCAGC 000640
000641 TTTCCAGTCA CTGCGATGGC CACTGGGGCG CCCCTTCCAT CCTGGTTAAA TTCTCATTGT GATCCCCAGC CCTCTTCTCG 000720
000721 GTTCCCCACA CCCAGGAGGC CGGTTCTCCG CCGCTCAGGC TGGGAGAGGT CACCGCTCCG GGCAGGGTGG ACCCCCAGCT 000800
000801 CCGTCTCGGA GGACCTTTCG CCGGAGGCGA GCAGGAAGGG GTTAACCATG AGCCTCCCAC CCTCACCTCC CAGACCCTGG 000880
000881 TGCCGGGCTA AGGCCTCCGC TTCCCTCCTG AGGTCTCATT AGGAAACCCT CACCGCTATT TTCAACATTT CCTCAATCAA 000960
000961 GTGCCTTTAA ATAGAGCTGC ACAAACAGAT TGGCGGCAAA AGCGTAGATC TTGTCACGAT TGAGACCAAT CCAGTATTTC 001040
001041 AGCCTTGTTT GCTTTGCAAT TACGGGTTGG CTTGTGGCTA CGGTGCCACC GGGGCAAATC TGCAGCCGCT CGCTTTCTCC 001120
001121 TCTGCGCTCC GGGCGGGTGG AGGAAGCGAC CCGCGGAGTC ACTGCAGGGA GGAGAGGGGG ACGCGCGCGG GGGGAGGCGG 001200
001201 CGGAGGGCGG AGGAGACTCG CTTGCACCCC AGGGCCGCGG GCACGCAGAG CTGTGTTGAA GGACATACTT TTCAGGTTCC 001280
001281 TGACAGTCAC TGAGCTATAC GCAATAATAA AGTGCGTGAT TCGCGTGTGG AAACCAGTGT CGTGTCCTTA CCAGCTTCCT 001360
001361 TTTCTGTCCA CCTTCCCTCT CTCTTCTACC TCCGTTTCGC TTTTCTTCAG TGCATGTTAG CGGTTTGCTG GATTTCCCTT 001440
001441 CTCCCTCGCT GTTCAACTGC TAGCATGATT TGTTACATTT TCCACAGCTG TTTATTCTTG TTTGACTTTT TGTACAAAGT 001520
001521 CACTTTAAAT CTGCTGCAGA AAGAATAAAG CACCTAGCCC TTTGGATGGA CTCCTGCAGG CGTGTGGCTG TCCCTGGCCC 001600
001601 ACTTTTAATT CTTTGGAGAT GGCTCTTCTG TGTAAATCAG CTGCTGGGTG CGTTCGGTCA CCTCGTAGGC CAGCCTAGTT 001680
001681 TGTATCAGCA GAACAGTAGT GGACTCGACT CAGGTCGTAA GCCTTATATT TCACAGACAA TTAAATCTTG GCTGCTGTTG 001760
001761 AACAAAACTG TAATATTTAC TTTGTTCTAT ACCGAGAAGC ACTTTTAAAG TAAAAAAGAA AAAAAAACCA AATACTACAC 001840
001841 TTCAAAAAGA AAATATGACA ATGAATCTCT TTTTATGGAT TCTCTCTGCA TAAGTGGAAA CAATATGATT TAAATCCCCA 001920
001921 ACACCCCATC CCCCTTTTCA GACACAGCTG AAGTGATACA GATACTGTCT TCTAACACAT AATCTCCCTC TCTCGGGAGA 002000
002001 GGCACCTGCC TGTGCTACAT TCGATTTAGT TTGTAAGGTT TCAGGCCCCT CCCCGACCCA TGTAATATGT AACAAGGATT 002080
002081 ATCAAATAAT AAGGTCTTGG ATGTGAAGTC TGCTTTACAC AAGAATTCAA GAAAGATAGG CAGGACTTGA GTAATTATGT 002160
002161 TACAACTTCA TATTACTTTC CAAATGAATA CCCATTTTCT TCTCATGTCA ACTTCTAGAG ATGGGATGCT GAGGCAGAGA 002240
002241 AATATTTTTA TGAGACTCTG GAGTACATAC TAAAATGTGC TTCCTTATTA TTTAAGAATG TGTAAGGTAT GGACCTACAT 002320
002321 TTGTTTGCTG GTGGTCATAA AATAAATTCA TAGCCATTGT GGCCAATAAG CAATCTCCTT CACGCTTTAA AAGTTTTTGG 002400
002401 TTTATAATCC CACCTGGATT GTATTTTCAC TATTCTGTAT CACCCTCCTA TTGCAATATT TTGGTTCTCA ATCTTATGTA 002480
002481 AAGCAAACCT CAGAAATGAT CGTTTCCATA AAATTGTGCA ATGGCAAAGC CACAGAATAA TATTTTGAGT CCATATAGCC 002560
002561 GTGCATGCTC ATCTATATAG CTCTTATACA GTTTTCTAGC TGATTGCTTT GGTATTTCAA GAAATAGGAA GCAGTAGCTA 002640
002641 CCTATTTTAA TGAAAGGGTA CCATTTCATA AGAATTCTAT TTTCACTGAA AAAATTGGTC TGGCACATTA TTCAATGCAA 002720
002721 AAGATTATAA TATTACTTTC ACGTGTGTTA ATCTGTTTAG TATAAAACTG CTAGGGTGTC TTAACCATTA ACGCGTTTTG 002800
002801 CCACACTACT TTCAAATGGT GATCTGAGAT AATTACGAAG ATTTTGATGT TAATCCCACG TTAAATGAAC AACTATGAAA 002880
002881 ATAATCTTAA AGCATTATTA CTCCCATATA CATGCCAGCA AACCCAATTG TGGAGAGAAC ATGATTACTT TTTATCTGAC 002960
002961 ATTATCCTAT AAGGATATGG CTACATTTAT TTCTTTTAAA ATTGGAGCAG TTTTCAATTA CTTTTTAACA GAATTGTTTT 003040
003041 CAACACAGCA TTTTGCAGTG CCCATAAACC ATAGCAACTT TGTCCTGATC GATACATATT TTTCTGCATT ATTATTCATT 003120
003121 AGCCTCTTTG CAAACTCACT AAAATAGAAT AGTATTAAAG TATGAATATA TAGAGAACAA TTATTAGGTT CTACATATTT 003200
003201 ATTTAGGTAA ACCAATGTTA TTAAAATTAA AAACATGTGC CTGGCATATA AGTGCTTCTT CAGGAATTCT TTTTTGGATG 003280
003281 CATAGTTATT ATTTTTTAAA CAAACTCAGA TTTTCAAACA CTGATTTTCT TCTCTGAACG GGCATTGCAT TGTTTTAAAC 003360
003361 AGTAGCTCCT GGAATAATGC CACCTTTAGT ATTTTAGACT TTCAAACAAC AATTGGAATT GGATAAATGC TTTCAGCTGG 003440
003441 GAGCACTTTC CTAATACCTT TGTAGGTAAT GGGATTCTCT ATTTGTGCTG GGTGACAAAC GGACAGTGCC CTGGACAGAC 003520
003521 TGCCTACCCT CTGCAGAATC TACCAAAAAG TAGAGTTTTC CCATGAGACT GCTTGTGGTC CATCTAAAAA TGAAAAAATA 003600
003601 ATCAGAGAAA ATGCGCAAAG CCTTTTCTAA CTACAGTTAT GAAATGATGG CTTAAAGAGG TATTTAGAAA ATAAGAGTGG 003680
003681 AGTAATACAG AAACAAAATC TGAAGAAGAA AGTTTGCTTA GGAGCTGATG CTCTTTGTCT ACAAACAAGA GGGTAAGGAG 003760
003761 CTGGATCCAA TTGAATTGAA TTGTTTTTGT TTGCTTGTTT GTTTTCTTCC ATTCAGTGCC TTTCAAACTG TTTTTTACTG 003840
003841 GATGAAGAAA CTCAACCAAG AAAATATATG TCGATTCTTG TATATGGGAC AATATTAGCT GCTGTGATTT TTAATACTAG 003920
003921 CATAAAATAT AAGAATCTTT TTATTACTGT GATATTGTTT TTTCCTAAAT GAATGCATAG TGTAACAATT GGTGTCAAAA 004000
004001 AGCATTGAAT TTTTTTCAGA TGGATTAAGC TGGAATAATA AAGTATATCT ATGAGATGAT TTCTGTAAAC TCTGACTTGC 004080
004081 TGAGAAAAAA GTGAAAAAGC TTTTTCTGGA AGAAACATGG CAACTTAACC GTTATTAATC TGGACTAAAT AAAACAGGAA 004160
004161 ACTGCTTCTT TACATTTCTA GTAATTTTTT CTGCTTTTCC AAACATTGTT AAGTTCTATG CAACTTGTGC TATTCAAGTA 004240
004241 AAGATGATGT CAGTAATAAA ATTACAGAAT CTA
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Predicted Small Protein

Name ENST00000507062.1_smProtein_1565:1807
Length 81
Molecular weight 9199.6839
Aromaticity 0.1375
Instability index 57.056375
Isoelectric point 9.69488525391
Runs 11
Runs residual 0.00131578947368
Runs probability 0.0498787557611
Amino acid sequence MDSCRRVAVPGPLLILWRWLFCVNQLLGAFGHLVGQPSLYQQNSSGLDSGRKPYISQTIK
SWLLLNKTVIFTLFYTEKHF
Secondary structure LLLLEEEELLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLEEELLLLLLLLLLLHHHHHHH
HHHHHLLLEEEEEEEEELLL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLHHH
HHHHHHHHHHHHHHHLLLLL
PiMo iiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooTTT
TTTTTTTTTTTTTTTiiiii