ENST00000505844.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000505844.1 |
Source |
Gencode19 |
Same with |
lnc-BASP1-3:11,NONHSAT100642 |
Classification |
intergenic |
Length |
687 nt |
Genomic location |
chr5+:17436846..17441787 |
Exon number |
2 |
Exons |
17436846..17437322,17441578..17441787 |
Genome context |
|
Sequence |
000001 TACCACTGAA CTGTTTAATA TTCTAGAATT TATGTTACAC AGTAAAAGAT AGACAACTCT GTCTGCAGTT CTGGGACTGG 000080
000081 GATATGCCTG TGCATACACG CATCTGCTCT GTTTTGGTTT CACTTCACTT TAGTTATTTG ATTTGGTGTC TGCAAAACCC 000160 000161 TGTGTGCACA TTTTTATGAT CCTTGGGACA ATTTACTGCC AACCTTGCTT GAACTCTAAA ATATGCCTCC AGTTTCGGAA 000240 000241 AACCACAAAT TATTTACCAA GGAGGCAAGG AAATGGAGGT CACTGGGCTC ATTTCTTACA TAATTTTCAA CTTCCTTTCT 000320 000321 GAGGCCTGAC ATCTCCCGGC AGTCACAGTG ATGTCTTCCT TAGATGGATT CAATAATGGG GAAGAACAGA TGAAAAGTGG 000400 000401 TGAAAGTTGC TAACTGCTGT GTTCCTCTGC TTGCTTTTCA TGCTGTGTGC CAGGAATCAA AGCTGGAGGA GCGGAAGATA 000480 000481 TACAGGGAGT CCACGGAGCC TCCCCTGCAA GCATCAGTAC AGAAGTCGAT GATAATCTGG ATGCAAGCCC AGGAGTGTGG 000560 000561 AGTCCACTGA CTCAGAAGAC CTGCATCTAA GGAATTGGCT GTTCTTATCC TTAAGAATGA TGACTGTGTT TCCAATTCCA 000640 000641 GTAGACCCTT TGATGCGTTC TGAATAAATA TTCCTTTTGG AATTGAA |
Predicted Small Protein
Name | ENST00000505844.1_smProtein_83:178 |
Length | 32 |
Molecular weight | 3621.3641 |
Aromaticity | 0.129032258065 |
Instability index | 60.7967741935 |
Isoelectric point | 7.77593994141 |
Runs | 4 |
Runs residual | 0.0722446236559 |
Runs probability | 0.0485338279457 |
Amino acid sequence | MPVHTRICSVLVSLHFSYLIWCLQNPVCTFL |
Secondary structure | LLEEEEEHHHHHHHHHHHHHHHHLLLLLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiTTTTTTTTTTTTTTTTTTooooooo |