ENST00000505364.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000505364.1 |
Source |
Gencode19 |
Same with |
lnc-C4orf42-1:6,NONHSAT094694 |
Classification |
intergenic |
Length |
2423 nt |
Genomic location |
chr4+:1246779..1259951 |
Exon number |
2 |
Exons |
1246779..1248377,1259128..1259951 |
Genome context |
|
Sequence |
000001 ATCGCTGAAA ACTGCCACAT AACTTGTATA ACTGCTGTAA GGCTTGGTTT TCAGCCATAA GATGGGAAGA GAAGTAACAT 000080
000081 CTACCTTGCA GGATGACTGC AAGCTGTAAA ATGCCACAAA GCGCAGGGGA GCCCAGAACC GCCGCAGCAG GACAGGTCCT 000160 000161 CTGGAAGCAG ACAGACCTGC CTTGTTACTT TAGCCATCCA GAGTCCAGTT TAGCCAGTGA TGAAATGAGT ACAAAAGAAC 000240 000241 ACCTTTCTTG TAGGATTGCA AAATGATGTC TTCATCCATT CTGTGCTGCT ATAGCAGACT CCTGCACACT GGGTAACTGA 000320 000321 CAGCTTACAG AAGCTTGTTG GCTTATGGTT CTGGAGGCTG GGAAGTCCAA CCTCAAGGGG CTGCATCTGG TGAGGGCTTT 000400 000401 CTTGTTGCAT CATCACATCG CAGAATAGCA GAAGGGCAAG GAGAGAGAGA GAAAAGAGTG CTGAACCCAC CCTTTGATAA 000480 000481 GAAGCCCACT CCCATGATAA TAGCACCAGC CCATTCAGGA GGGCAAAGCC CTCGTGGCTG CATCGCCTCT CAAAGGTTCC 000560 000561 ACCTCTCAAG ATCATCACAA TGACAATCAA ACTTCATGAA TTTTGGAGGG GACAATTATT CAAACCAGAA CAGAGGGGGA 000640 000641 TGGCAAATGT TCTGAAAACA AGCCTAGAAA TTGATCTTAG AAATGGTGCA AAAGTAGATT TCCCCTTCTG TCTTTACCTG 000720 000721 TGATGGTCTA ACCCCAAAAG CCTCCCAGAA CAGAACTTGT GAGCACAAGA TAGAAACAAC AAACTTGATG CAGAGCTGAG 000800 000801 CTCACAAGGA GGTCAGGGAT GTGACAGGAA CCAGAGACAA ACAGAAGGCT GAAAACCAGG TCTTAAAGTG TGAGAGCCAA 000880 000881 AGGGCAGCAG CCCAGGAGAG TGTTCGTCTG GAGCCCCGGG GTTTAAGTCT CCACACTCAC ATGGGAAAGG AGACGAGGCC 000960 000961 TCCCTGGATC CACGTGAATC AGGAACTGGA ACAAGGGCAC TCAAAGGGCT ACGCCATCAG GAGAGATGTG AATGAGTGTG 001040 001041 CCCACAGGAA CAGGAAGACA ACAGGATGGT TCTGTGTTTG CCTGCCTGTT GTGGTTCTGT GAGACAGAAA CAGTTTTGAT 001120 001121 GACAATTGAT AATCAGGACT CAGAGCCTTG TTAGACTTCA GGTATTGAAT TTTTTTTTGA GACAGGGTCT AGCTGTGTTG 001200 001201 CCCAGGCTGG TCTTGAACTC CTGGGCCCAA GTGATCCTCC TACCTTGGCC TCCCAAAGTG CTGGGATTAC AGGCATGAGC 001280 001281 TACCGTGCCC AGCCTAGGTA TCGAATTTTC ACAGGTTTCA CAGTCCAGGC CCTACCACCC CTGCAGCAAA TAACTTGATA 001360 001361 TAAAACCTGG GCCCAGGCTA GTAATACCCT TGAAGCCCAT GACAGAAGCA GGCACAGTGA TAGAAGCAAA ATCACGTAGA 001440 001441 CATTATCAAT CTAGCCCCCT CCAATTCCTA CCCATAAAGC CCACTGAAGA TGAATTTACA ATCATAAAGT ACAAAACATG 001520 001521 CCAAGAAAGA ACCACATGAG GGAAGTCAGC AGATGTGTGA ACAGCAGGAA CGGACTCCGC CACCAAAGGC CTTCAAAAGA 001600 001601 ACCAGCTGGA ACCCTCTGGA AAGTTCCAGA ACCACCAGCA TCAGGGTGGC CAAGACGTGG GCACTGCCAG ACAGGGGACC 001680 001681 ATGTGGGGCC AGAAGAAATT ATAGGACATA GCAGGTCTCA GACATGACCA GAGACTGCTG CCAGTGGTGG AAGGCTTCCC 001760 001761 TGAGCGTGAT GACCTGGCCA CTCCACAGGA AGCCTCCACA CCCAAGGTTA AAGGTGTCCA GCTGCGGCCA GGGTTCCGGG 001840 001841 GTACCTGTGG ATCCCGTGAC GTGGCACCGA AGATCTGAGC TGTGCAGAGG AGCTGCACCA CAGAGGCCAG GTTTCCGTGT 001920 001921 GGAGAACGCG CATAATGGGA GGCCTTGAGC TGAGACCCAG CCCCCGACCC CCACCCCCAC CCACCAGCAG GGGATTCTCC 002000 002001 TCAGGGCCTC ACAGAGCACC ACGTGGTGTC ATTGCTGGTC CTGCCATAGC TCCCAGGACC AATGCTTCCC AGAACTCCCT 002080 002081 GCTACATAAA TACATCCGGT CCCTTTCCCT CGAGATCTTG AAAAGTGAAG ACTTCACTTG GCAGTAACGG TAAAACATTT 002160 002161 CAACATGGTA AGTTGTCATT TTATGCACAC ATGGAATGGT GGCCCATAAA GGGCCTGGGG GTCCAATATC CTACATACTG 002240 002241 GACTCCTCAT TAGTCCTCTG AGTCTTCTGT TCCCCAACAC ACTGCATTGG GATCAAACTG AATTTGCAGC CAGGCATCAT 002320 002321 AGCTCATGCC TGTAATTCCA GCACTTTGGG AGGCTGAGAT AGAGGATCAC TTGAGGCCAG GAGTCCAAGA CCAGCCTGGG 002400 002401 GAACATAACG AGACCTTGCC TCT |
Predicted Small Protein
Name | ENST00000505364.1_smProtein_1934:2146 |
Length | 71 |
Molecular weight | 7600.5946 |
Aromaticity | 0.0571428571429 |
Instability index | 64.8414285714 |
Isoelectric point | 11.2916870117 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.037939900685 |
Amino acid sequence | MGGLELRPSPRPPPPPTSRGFSSGPHRAPRGVIAGPAIAPRTNASQNSLLHKYIRSLSLE ILKSEDFTWQ |
Secondary structure | LLLEEELLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLHHHHHHHHHHHLLHH HLLLLLLLLL |
PRMN | - |
PiMo | - |