ENST00000500817.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000500817.2 |
Source |
Gencode19 |
Same with |
lnc-EGFLAM-2:2 |
Classification |
antisense |
Length |
1342 nt |
Genomic location |
chr5+:38558932..38671318 |
Exon number |
9 |
Exons |
38558932..38559279,38595024..38595171,38641031..38641131,38644452..38644547,38646734..38646816,38647335..38647537,38653179..38653262,38653967..38654054,38671128..38671318 |
Genome context |
|
Sequence |
000001 ATAATCAAGT CATTTCTCTC CCTAACAAGT GAGGATTACA ATTCAAGATG AGGTTTGGGT AGGAACACAA AGCCTGACCC 000080
000081 TATCCCACAG CATGTCCAGG CTGCCCTAGC ACCACCCAAT AGAAGGGAAA ATGGCAGAGG GAAAGTCCTA GTGGAAAGAG 000160 000161 ACCTCAGTCT CAGCTAATTG TGGTGACAAT ATATTGCTTT TGCAAATTGT ACATAAACAT ATGACCAGGT GAATGTATCG 000240 000241 CCAAGGCTCC TGCCAAGGCC TGGGATGGAG GCCTAGAGAA GATGCCCGAA AGTTTATGCT GTGTGAGCTT CACAGAAGAC 000320 000321 CTGCCTTCCA TGTATACCCA TTTTACAGGT GTCTGTGCGG TGCAGAAACT GTACAACTGT ATACAGTGAC CATTTCTACT 000400 000401 CTGGGTCTCT AAACAAGGGC TGGTATCGTT ACAGAGACTG AAGACTGAGG AAGACCATCT CTGTAGGATG CCAAGGATTG 000480 000481 ACTGGAGAAA GTCTGGAATT TTCCACAAAT GAGTTCATTT ATAAAGAGAA AGGCAAGCTT TGATGACAAC ACCTTCACAA 000560 000561 AATGGAGGCC TTTGAAAACA TTGGTCTGGA TTGAGGAGTT GGAGAAGAAT GAAGTGCACA TCAACCAAAC AGAAGAGAAG 000640 000641 CAATTTGGAG GAGGAAAAAA TCAGTTCTTC ATGAAAGGAT CACATTGATC TTGGTTCATC CCAGTGCCTC CTCTGCAGAC 000720 000721 AATCTTGTCC TCAGTCTTTC AATTGTTTTC TTCCCATGCC CTGACAAGCG AACCAGATCA GGAATTTAGG AGCAGCTTAC 000800 000801 CTAATGGCAC CTGGTTACCT AATGGCACCC TCAACAGCTT ACCTAATGGC ACCCTCACTT GGTTCTGGCT CCGGGCCTCT 000880 000881 CACAAGATTG TACACATGAT GATGGCCAAG TTTGCAGTCA TCTGAAGTCT TGACTGGAGC TGGAGACTAC ATTTCCAAGA 000960 000961 TGGCTCACTC ATATTGCTAA AGCAATTACA GCTCACTGCA GCCTTGACCT CCCAGGCTCA AGCAAGCCTC CTGCCTCAGC 001040 001041 CTCCCAAGTA GTTGGGACTA CAGATCTTTT TCAATGCAGA AGCTTAAAGA AGACACTAAA AAATGTGTTT AAGATCTCTT 001120 001121 TAAACTGAAG TCTTCTGAAC AAGTGAAGCA GGTACATGCC TGGGAAGACA GCCAGGGAAC AGGCAGCTAC ATCAACCAAG 001200 001201 AAGGCTGACA ACATGTTCCA TCCCACAACT ATGTGGTAAT TGCAAAGATG AGAAAATAGC AGAGATCCTC CAGTCAGCCC 001280 001281 TGGAATGAGT TTAGGGGAGA GAAATCATGC AATCTCTTAG TAACATGGCA TCTGTAAATT CA |
Predicted Small Protein
Name | ENST00000500817.2_smProtein_281:388 |
Length | 36 |
Molecular weight | 3959.5875 |
Aromaticity | 0.114285714286 |
Instability index | 48.2971428571 |
Isoelectric point | 4.64923095703 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.0238726121079 |
Amino acid sequence | MPESLCCVSFTEDLPSMYTHFTGVCAVQKLYNCIQ |
Secondary structure | LLLLEEEELLLLLLLLHHHHLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |