ENST00000500197.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000500197.2

Source

Gencode19

Same with

lnc-MEF2C-2:12

Classification

intergenic

Length

3381 nt

Genomic location

chr5-:87960263..87969157

Exon number

4

Exons

87960263..87963409,87966854..87966903,87968783..87968908,87969100..87969157

Genome context

Sequence
000001 GCACACACCA CTTCACTCTC CACTCCGAGG CTCAGGGAGC AAGTGCCTGG CATGGGGGAC GCCGAAAGAA GCCTGTTTGT 000080
000081 GTGCTGCGGC CGTGCTGTGA CTTTGGATCT TGTCTTTCAG CCGGCGCCTC GGTTCCTGCC CAGCTGGATT TGGGGGGCAG 000160
000161 CATTGCCTGG CGCAGGGAGA TCAAATGAGA CTGCAAAGAA GCATAAAATG AATAGACAAT CCAACCAACC AAAGACCGGG 000240
000241 GGCAGCAGCA GGCCAGCAAG ACGGCATCTT CTCCTTCCCA GCCTAGAAGC CCTGTGAAAT CGAGGATCTT CCCCCTAAAA 000320
000321 CACATACACA CAAGATATGT GCAATCAAGC TGCCACCGCT TGGTAAAAAG CCATGGTGCC TAACCAAAAA GGATCAGGAA 000400
000401 CAGATCCTTG AATCAGCTGT CACTTCTATA GAATGGGATT TTTTTTTCCT TCCTCCTTAA CCTGCGCTGG AAATTGCCGT 000480
000481 TGGCTTTATA CATCTCTATA GAGAGAGGCT AAAGAGTCTT GCGTGAGAAA GAAGCAATTT ACAATGCAAA TAGAGGCCTG 000560
000561 TGAAGGGACG GATGCTGCTG CTCACTCGTA ACAGCTTGCT GCACCTTAAT AGCTGGTTTT ATTTTCTGAT ATTAATAGAT 000640
000641 GAATTGTTGG CTAACGCTGC CGGAGATTAC TTGCTGAAAG GAAAAAGAAA AGTTCGGAAT AAACTCTGAA GGCAACAGAT 000720
000721 CTCGTTTGGA TGTTTTAGCC GCGCACACAC ACAAACAGAA ACCAGGTCAT ATTTACATAA AAGGAGGAAT CTTAAGCGCG 000800
000801 GCAAGTATCC TGGACGACCA CTCTTCGGTA CTGCCAGAAA GGATCAGGAC CTGGAGTCTG GCAAGAGGAA GACAGAGGCC 000880
000881 TGTGTGGGAA GCGAGTTGTT ATCTTTGGTT ATCTAGCTGT ATGAGTGTAT TGGTCTTCAT AAAGCTAGAT AACCGAAAGT 000960
000961 AAAAACTCCT TCAAGATCGC CGGGGAGCGT GTGAGAATGA AAGACTACAG CCGAGAGACA GTAAAAACCA GAAAGGTCAG 001040
001041 GAATACTTAT TGAATCTAAC TTTGTTTTTG TTTTGTTTTT TTCCTTATGA TTAAAGGTGG GATGAGAGAA AATTAAATGA 001120
001121 CACACACATG CTAAAATATC AAGGTTCCAG ATATGTCTTG AGAGGGGTTG TTGCAGCTGC AAAGGAGAAG TGTATAGTGA 001200
001201 TAATGAGTAA AGATGCATGT GCAGTTTGTT CTATTTTAAG GCAAAAGTTA TATCAGGGAT TTTTTTCTTA GAAAGGTGTT 001280
001281 GCAGAGATGT CTGGTACCTA GTTTAAAAAT GATTCCATAA TATGTAGACT TGGGCAGTTC CTTTGGGAGG CACCTCCCTC 001360
001361 TCAAAATTTG AAGATTGTGC TTGGAAATTA CTTTACATGT ATTTGGGCTG TATGTCAATT TGTACGAAAT TAGACTTTCA 001440
001441 GAAAAGTTTA TACTGGAAGG TTAATAATTT GTATCTACTG AGGACTTAGA GCTAGCAGGC AAAATGAAAA AAAAAAAAAA 001520
001521 AAAAGCAAGG GCTGATTTTT ATTCTTCTAT TCAAAATACA AGGACAGATG CTTCTCTGTT CCAAGAGGGT TTCCTTGAGG 001600
001601 AAGCTACTGA AGCAGAAAGA CATGATGGAG ACGAGATCGC CTCCCCTCTT GTCAAAGTGT TAAAAAAATG TTCTGTCTTA 001680
001681 CTCTGCGCCT AGCATTGGAA ATGAAAGTGA CATTTACGCC ACAACCCACG TGTGCGCCTC CTCTCTTTTT GTTTAAGGAT 001760
001761 GATCAGGTCT ATCCAGGAAA CAGCTCTGGC ATCCCAAACT GAAATAATTA GGACGTATAT AGACCTGACA AAAATGGAAA 001840
001841 GGGGGTGGGG AATCTGAGGG TCTGTCTTGC CTAATTGATT CCGCTAAACG GAATGCAGGA GATGTGAACG GCAGGACGCT 001920
001921 CCGATTCCCA CGCTCGGGGG CAAGTGATAA AGCGGGGCCG GGCAGCCTAT GACAGACAGC CCTGTTGGGG GGTGGGGGTA 002000
002001 TGAAAAAAAC ATCAAGTGCA CACACCATAC TCATCTCCAT CGCTTAAGAA AGTAAAGGCA TTTCCCACCC ACAGCCATCT 002080
002081 GCAGCTTCCC AAATGGCAGC ACCAACTGGT CTGTAGCTGC TACATAGTCT GCTTCTGTTA ATTTTTTAAC CACTGTTTAA 002160
002161 TCTGGCCATA ATTAAGTTTG GCTTTCTTCG TTGTTTGAGA TTTTCAGAAT TCAAGGCAAG CTAGTAGAAA GCAATTCCAA 002240
002241 GAAAGTCCCA TGACTGCCTG CCCCTAATGT CAAAATCTCA GTCCATGAGA TTATGGCCTT GTGACCACAT TTTTGCTTTT 002320
002321 GTTTTGGGTG GGCAAATGTG TATAGAGATA AAATACATAT CTCTATATAA CAGTCGTTAT TATAATTTCA TGAGGCTTTT 002400
002401 TACCTCTTAA CATGATACAT CTAGGAACTT GGTCTAATTG TGCTAGTAGA TATACACTAG AAGTAAAACT ATAAAGTCAT 002480
002481 TAGCCTGTAG AAAGTTGATT ATGATAACAA TATGATAAAA AGTTTGTTTT GGAATAGTCT CAGCTAGATG GGTCTAAATA 002560
002561 GCCATTTTAA TGTAATCTAA AAATAACACT ATGCCTAGCA GAAACTTTGG CGCTTTGGAG GTCCCCATTG TCGCCTTTTC 002640
002641 ATAAAAGTCC TTAAGTTTTC CATATGTCAC CAAGCAAACA TTTGTATAGG CATTTACACA GAAATATAAC CATTGCAATT 002720
002721 AGAAAATATC CAAAATAGCC TGTTATCTTC CACGTGGCCT AGATTATTGA CAATCCCAAA TATACAATTT TTCTTTAAAA 002800
002801 GTAGTACAAT TTCCTTTGTA GCTTCAATTC CTTATATGAC TTCAGACTGG AGAAGCCTGT TAAACCACTG TTAGTTTCAG 002880
002881 TTAGAAAGTC TGAGAGACTT TATACATAAA TTCTCAATTT GGCTGCTGTA CACGTGCCAG AGTTTTACTA CTGTAGTGAC 002960
002961 CGTTGAGAAG ACCCTTGTTT ATTTACATTT GAAGCACTGT TTGTGCAAAC AACCTTTCAT TGTTAAGTGC CTGTATTCCT 003040
003041 TTCATTTACT TCATGTCCAG GGGTGCTATT TACCTAGAAC CATTGTCTAC TACAATTAAC ATTTACATTA CAAAGTGTGT 003120
003121 GGTTTTCTTT TTCAAGGAGG TTCAATTAAG GCAATAAGAT GTTTGCTGGA GAAACCTATT GTTTACTGAA AGCACTCAAT 003200
003201 GAAGTCAAAT TACTGAAGCT TTTGCCTACA TCTTGGTCTT TTATGTAAAT ATGTTAAATA TAACATCTAA GGAAAATAAA 003280
003281 CAATATTATA ATTATGTGTT TGCCATTGTC ATATCAAACT TGCTTTGTAT CATACTAATG TTACATAACT TATCGATCAA 003360
003361 TAAAAATACA TTTCAATGTT A
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Predicted Small Protein

Name ENST00000500197.2_smProtein_1127:1270
Length 48
Molecular weight 5274.3216
Aromaticity 0.106382978723
Instability index 40.1446808511
Isoelectric point 9.66351318359
Runs 7
Runs residual 0.0173404255319
Runs probability 0.0251974663739
Amino acid sequence MLKYQGSRYVLRGVVAAAKEKCIVIMSKDACAVCSILRQKLYQGFFS
Secondary structure LLLLLLLLHHHHHHHHHHHHLLEEEELLLHHHHHHHHHHHHHHLLLL
PRMN -
PiMo -