ENST00000499521.2

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000499521.2

Source

Gencode19

Same with

lnc-IL17B-2:1

Classification

sense

Length

8636 nt

Genomic location

chr5-:148873877..148884233

Exon number

2

Exons

148873877..148878856,148880578..148884233

Genome context

Sequence
000001 CAAATGCCAT TGAAACCGCT AGTCTTATTT CCTTTCTACT TTTCTTTGGC ACTCTTACTG CCTGTAAGGA GTAGAACTGT 000080
000081 TAGGGCACAC TGTTGCTATA CAGTTTAACT CCCATTTTCA TGTTTTGTCT TTCTTTTCCC ATTTCTGGGG CTTACCTCCT 000160
000161 GATACCTGCT TACTTTCTGG AAGTAGTGGG CAAGTAAGAT TTGGCTCTTG GTTTCTAATT TTTAAATTTC TGAATACTGC 000240
000241 CCTAGTCTGA ACTTGGCCTT TATAGATTAA TCTTTGCTTC ACATTTTTAG TGTTGTATTT AAACTATTTT ATAATTTAAA 000320
000321 AATAGATTCT AATCTGAAGA TACTTTTCAA GAAATATTAT TAACTGATGT CATCCTCATC CCAGCAGCTC ATCTGTTAGG 000400
000401 AATGAAGTTG AGATGCTTCT ATTCCATGTT TTTGTATTTG GGAAGGATTC AAAGTTGAAG GTTTATTGTC GTTGGGTTTT 000480
000481 TCAGATGGTG ACATGTAAAC TCAGGATAGC AAACCCTAAT GTTCACACAG TGCTCTGCCT CTGCATCTCA GTTGGGATAG 000560
000561 TTGCTCCTTT TGAGTGTTTT AATCATCGTA TAACTAATCA TAGTGCCAAG AAGTTCATAA TGTGTTATGT AGCTAATGTC 000640
000641 ACTGAAAAAC AGTCCTACCA TTTTAGGTAA GACCAAACAG AGTCTCTAAC CCAAGGACTT GTTACACCTG ACAACCTATA 000720
000721 GTATATTTGC TTTTTCTCAC AAAATGAAAC CAATTTTGCC GAAAGCTAGC TGGGATAATA GGATCATCAC AAGTTGCAGT 000800
000801 TTCTATAACT AAAATTAGAT TGAAATCTCT TCTGACCTAG AACATTTTAC TTCAGGCATT CAGCAGATTT CAGAAAGAAT 000880
000881 TACCTTATTT TAAGTTAGTT TCTTTGTTAG TTTACTGTGT GTCTCTTATT CAATAAACAA GCAGAATTTG TGTCCTGCCC 000960
000961 TATCCATGTC TTAAAGATGA GAAGTTGGAT CCACTGAGTT AGTTTCATTG GGGCGGGGGA AAGAACTGTA ATTAAACTTG 001040
001041 TTTAATCCTT ATTTTGTATT GTAGCTATTT TTTGTAAAAG CAACTTAAAA TCTTTTAAAA ATTTTATAGT GACATTAGAG 001120
001121 ACAATGGTCA TACAAATTAT CACATAAACA TGGACTTGAA AAATTAGGCT TTTCATAAAA CACATCACAT GTCATTGACT 001200
001201 GCTTTTTAGA AATACACTTC CAAGGCAGTA CATCTGTATT GCTACTGAAA AGTGCCATTT CACAGAACAC AGACTTCTTT 001280
001281 TTGCTCTTTG ACATCTTGAA AACATCTGTT TTTCTTTTTT AATACAAAAC TTTGTGCTCA AGACAAATCT TACATGAAAC 001360
001361 TCTCATAAAC CATGAAAATG TAGCTGGCCT TCGGGCCTTA GGCATGAAAT AAGCATGAGG AACATATTCC CCTAACTTCT 001440
001441 ACCCCCAGCC CAGCAAGTTA TCCTTTAAGA AATCTCCTAG GAATTCTGGA GTTTGAAAAC AATTGCTCTA TGTTATTCCT 001520
001521 GCTTCCAGTC TCTAAGTAAC AAGGGCATTT AAAAGCATAG TCTCTTAAGG TCCACTATAG TGGTTCTTTA TTTAAGGAAT 001600
001601 AACTCAGCTG GGTGCAGTGG CTCACGCCTG TTATCCCAGC ACTTTGAGAG GCTGAGGCAA GCAGATCACT TGAGGCCAGG 001680
001681 AGTTCGAGAG TCTGGCCAAC ATGGTGGAAA CCCATCTCTA CAAAAAATAC AAAAATTAGC CAGGTGTGGT GGCGTGCACC 001760
001761 TATGGTCCCA GCTATTTGGG AGGCTGAGGC AGGAGAATTG CTTGAACCTG GGAGGTGGAG GTTGCAGTGA GCCAAGATTG 001840
001841 TGCCGCTGCA CTCCAGCCTG GGTGACAGAG TGAGACTCTG TCTCAAAAAA AAAAAAAAAA GGAACTCATA CAGCTCAATG 001920
001921 ATTCATTGAT CCCAATAATA AATCGTTTTA ATAATGATGA AAACATCCTA CTGGGGTTTT CTTGTTAAAA ACTTTAGGAC 002000
002001 AGGCGCAGTG GCTCATGCCT GTTATTCCAA CACATTTGGG AGGCTGAGGT GGGAGAATTG CTTGACCCTA GGAGTTCTAG 002080
002081 ACTTGCCTGG GCCACATAGT AAGACCCTGT CCCAGCTCCC TCCAACATCG TCCCCAACCC CCCCCCCCCC AAAAAAAAAA 002160
002161 AGCGCCAGGC GCAGTAGTGA GTGCCTGTGA TCCCAGCTGT GTTGGGAGGC TGAGGTGGGA GTATCACCTG AGCCCTGGAG 002240
002241 GTTGAGGCTG CAATGAGAGC TGTGATCATG CCACTGCACT CCAGCCTGGG CAACAGATGA GACCCTGTGT CACAACAAGG 002320
002321 AATTTTTAGA AGGTGCTTTT TATATTACTC TTCACAGAGT TAAATTTTCA GAGGATTTAG TATTATTGAA CTAAGTTTCA 002400
002401 TAAGTGTATT TTAAGCAAGT AAATCTCTAA TGTAGGAAAA TCCCCAAAAT GGTAGCATTT ACTAATGTTT TATATGGTAA 002480
002481 TTTTTGAAAA ATATATCTGA TATTTCTTCA GTAAAAATGG TGTTGTTTTA ATAACTTAAT AAGAATGTTT AAAGATTCTT 002560
002561 TAAGTCTGGC TTATCTAGCT AATGTGGGCC TATTAAATAA TAGGCAGACT TCTGCCTTCC TTATATTCTT TAGATCTTTT 002640
002641 CAAATACTCC ATTCCAATAT CCATCAAAAG ACTTCTCTTT ATGCCACTTA TTATCTATAC TAGTTTTTAA TGTTCAATTA 002720
002721 CTACAAGATT ATAATTACTG TTTTTATTCA TGTTCCCAAG AAAAATACAT AAGATTCACA CCCAACACAC TTCGAAATTT 002800
002801 ATTTCACTCC CTTTGACTAT ATGTGATTAT CAAAAAAGTA TTTTTCAAGA TATTAAAAAT AAGTAAAGGA AAATGAAATA 002880
002881 TTTTTAGGAC ATTCAAAATC TAATGAAGTT CAGTGTTTCT TTAATTGAGG GCAGGCAGAG GTGGGGGAGA ATTTCAGAAG 002960
002961 GTAGTGAACC CAAAGGTGGA TTCTTGGATA ATTCTACTAT TCTGTACTCT CATCATCTTA ACCCATCTGT TTACTACCCT 003040
003041 AACCATAGTT ACTAAGCAGA GTTTTATCAT AATAATATAG ACAGCTCTCA AAGTATTGAC ATTCAGAGGG GATTACAAAT 003120
003121 ATTATTTTTC TATCATATTG ACCTACCATG TCCACAGTCT TCCTTGAATT ACCTTCCAGT TTTACTGGGC TGCATCTACC 003200
003201 GTTTATGTCT AGTTTGACTT TTTCTGAGTT CACCAATTGC TGCTAGGAAT GTGCTGGTCA CTCAGCAGCA CACCCACATC 003280
003281 ACAGGGGAAG ATTTTGAAAT ACCTGGACAG TCTGAACACA CTGCTCTGAA TACACTCAAT TCTAAGAAGT ACCAGGGAAC 003360
003361 CGCATCTTCT TGCTGAAATC TTGAATTTTT GTCAGCTTTT TTTTTTACTG TGGACAGTAA AGCTGGAAAG ATCTAAATAA 003440
003441 CCCAACAGGA AATGCGGATG AAAGTGCAAG AGTTGGTTTG TGGTCATCTG GAGTCCATGT CTCCAAGACT GCTGGACCTT 003520
003521 CAAATTCTGC AACTTGTTAG ATCATCTGGA TGATAGCACA ACTGTTAGAA GACCTAGAAG AATACAGCGT TGCTATGACT 003600
003601 CAGTGGTGTT GAATGCAGAC CATCTACCAG CTGGGGAAAG AATCAATTAT AAACAGGAAT AAAGGGATTC ATTCCTCATT 003680
003681 TTAACTGATG TTACAGTGAA GATGGGTTCT TGAACTCTTG GAAGCCTGGA TGAGCCACCT AATCTGCAAG ATAAAAACCA 003760
003761 AAGACCAATG CGTATTGGGG AAAAGAATGC TTAGTACTGC AAGACTGTTG AATACCTGTT GAATATTCCT ATTGAGGTTT 003840
003841 TTTCCTAAAC ATACTTCAGT AACATCTTAG GACAATTCAC TGGAGAAATG TTGATCCCTG GCTGGAATGT CATACCATTG 003920
003921 ACCCATTTGA AGAGTTAAAG CTGGATTTGA CTGCTCTATT CTACCAGGAA TATTGTTAGG GTAGCCTTTT ACCAGTTTCT 004000
004001 AAACAATTGT AATCATTTAT TGACTCAGCA ATTCCTCAGA TAACAGGTCA AAAGATGTAC AGATACATTC TGAAGTTTTC 004080
004081 TTGCTATTAA AGGCACAAGA GTTTCCTTGT ATTTTGACTG ACAATGTAGC ATGTTTCCAT TTTAGTTTGT TAGTGATGGT 004160
004161 GGTTTTCCCT TTGAAAGCCA TTTGGTATAT TCACCATAAC AATTAGTTTA ATATGATTAC ATAAGAAAAC TATGATAAAA 004240
004241 CCCAGCAATT TTAGTAGTTG TGAAAATACG TTTTTTAAAT CATGTTTAAG AAGAATTGCA AGACTTGAAA CCAAATCCTG 004320
004321 ATGGGGGAAT TCTGTTTAAT CCTGTTTAAT CTGTTTAATT TCTGTTTAAT CCTTAGTTTC TTAACCTGCA TAGCTTATCC 004400
004401 TGTATTGTAC TTTTTTTCTT TTTTAAACTC CCAAACAAGA AGCTTGAAAC TTTTCCTGTA TTTTAAAATT GAAATTTGGT 004480
004481 CACAGGGTAT AGTCAGATTT TTATTAAGGT TTGGTTTGAC AACCTTTAAA AGAAAGGTTT ACCTCGCTAA TACTTCTTAA 004560
004561 TAACATGCAT CAAATGATAT TCCCTATGGT GAAGTATATT CTCAAAGTTA TGTTATCTTT CATTTTTGGC ATTTGGTGCT 004640
004641 TATGGACTTA GTACCCAGGC AACAAAGATC TATTATGCAC CTACTCTCTT GTATGTTCGC TATTATTTCC CAAAAAAAAA 004720
004721 AAGGGGCATA TATGCATAAG AAATAAATAT TAGAATTATT TTGTTTCTCC CACAAAGCCC ATGGGAGATG GCCCAACAAA 004800
004801 TGTTTAAAAA GTAAAAGAAG CTGGGCACGG TGGCTCCCAC CTGTAACCCC CACACTTTGG GAGGCCATGG CGGGTGGATC 004880
004881 ACGAGGTCAG GAGTTTGAGA CCAGCCTGGC CAACACAGTG AAACTGTGTC TCTACTATAA ATACAAAAAT TAGCCAGGCA 004960
004961 TGGTGGCAGG CACCTATAGT CCCAGCTACT CAGGAGGCTG AGGCAGGAGA ATCGCTTGAA CCCAGGAGGC AGAGGTTGCG 005040
005041 GTGAGCCAAG ATCATGCCAC TGCCCTCCAG CCTGGGTGAC AGAGCGAGAC TGTCTCCAAA AAAAAAGAAA AAAGAACTAA 005120
005121 AAGAAAAGGA GCAGTTTATG ATTGAAGAAA ACATGACCTG GGCTGAAGAA GTGAGGATTG ATTGGAGTGG GCTAGAATGA 005200
005201 GCTATAGTTT CTAGCTCATT TGTAAGGAGG TAGACAAAGG AGCATTGGTG CCTCAGAGTG GGTGTCTGGT GAGAGGAAAA 005280
005281 ACGGTGCTTA AGAGATTTTC AGGCTATTGC TGTGGGACAG GCATATTTTC TCCCTTTGCC TTTAGCTGTA GATAAAGTGT 005360
005361 GGTTATGACC TGAGGCTTCT TGTATTCAAA CTTGGCCTAG GGCCTATGTA GAGGCCCTAG GGTCTACTTG TGGTGGAGGA 005440
005441 GGGAAGTATT TGTAGAATGT GTAGGCTTGA GAAGTAAATA AAGCCAAAAA AGCATCACTT GCTTACATTT TTAAATGAGT 005520
005521 CACAAAACAA TCTTTCTAAT GCGGCCGGTA AAGAAGTTTT AAAGGTCTAA GGTTTCTCTA CAGAAATTAC ATGCTTCTCA 005600
005601 GGTCTTTGTT TAGTAAAATA ATACAGATAA TTATGCTTTG AATGCATTTA TTATTAAAGC TAACCGTTTT AATTTGTGTC 005680
005681 AGAAATAATT TGTGCCTATG GTAGGATTAA AATTGTATTC TTTAGTTAAA GCAAAGCAAT CTGTTTTTCA TTGATTTGAT 005760
005761 AAATATGTGA ATGCCTAATA TGTTCTGCAT ATGTAAAAAT GCAGAAACAT GCTCATTTGA ATTACTAATA ATTATTTTAG 005840
005841 TATGCTGAGA GGCTTTGAAT TCACTGTACC ACTCCTTCCT AGAGTCATTC AAAACAGAAA AAATTAGTTT TAAGTATAGA 005920
005921 TTCATGTTTT TCTGTTTTAA AAAGTTGAGC TAATACTTTT CACAAGAGAC GAAATAACAT GAGCCACTAT AATTATTGGC 006000
006001 TCAGTTCCAC CCAATTTCCA TATTTTGGGT GTAATTTAAA ATTTTTGACT TGGAATTTTA ACTTTTTTTT TGTTTTGATT 006080
006081 TTTTACCAGG TTTCTAAGCA TGAATTGAGG AACAGAAGAA GCAGAGCAGA TGATCGGAGC AGCATTTGTT TCTCCCCAAA 006160
006161 TCTAGAAATT TTAGTTCATA TGTACACTAG CCAGTGGTTG TGGACAACCA TTTACTTGGT GTAAAGAACT TAATTTCAGT 006240
006241 ATAAACTGAC TCTGGGCAGC ATTGGTGATG CTGTATCCTG AGTTGTAGCC TCTGTAATTG TGAATATTAA CTGAGATAGT 006320
006321 GAAACATGGT GTCCGGTTTT CTATTGCATT TTTTCAAGTG GAAAAGTTAA CTAAATGGTT GACACACAAA AATTGGTGGA 006400
006401 GAAATTGTGC ATATGCCAAT TTTTTGTTAA AACCTTTTGT TTTGAACTAT ACTGCTTTGA GATCTCATTT CAGAAGAACG 006480
006481 GCATGAACAG TCTTCAGCCA CAGTTGTGAT GGTTGTTAAA TGCTCACAAT TGTGCATTCT TAGGGTTTTT CCATCCCTGG 006560
006561 GGTTTGCAAG TTGTTCACTT AAAACATTCT TAAAATGGTT GGCTTCTTGT CTGCAAGCCA GCTGATATGG TAGCAACCAA 006640
006641 AGATTCCAGT GTTTGAGCAT ATGAAAGACT CTGCCTGCTT AATTGTGCTA GAAATAACAG CATCTAAAGT GAAGACTTAA 006720
006721 GAAAAACTTA GTGACTACTA GATTATCCTT AGGACTCTGC ATTAACTCTA TAATGTTCTT GGTATTAAAA AAAAAGCATA 006800
006801 TTTGTCACAG AAATTTAGTT AACATCTTAC AACTGAACAT GTATGTATGT TGCTTAGATA AATGTAATCA CTGTAAACAT 006880
006881 CTATATGATC TGGGATTTTG TTTTTATTTT GAAATGGGAG CTTTTTTGTT TACAAGTTCA TTAAAAACTA AAAACTGTTT 006960
006961 CTGTAAGGAA ATGAGATTTT TTTTAAACAA CAAAAAATGC CTTGCTGACT CACTATTAAA TAAAAATCTC CCCAATTTTT 007040
007041 TGATAGACTA CTTCAAGCCA TTTGTTACAT GGTATTCCTT TGCAAGTCAA TTTAGGTTTC GTGTTATAAC TTTTCCTCTT 007120
007121 TTTTTAAGAA AAATGAAAAA AGTAATTCTT TTGTCTGAAG GGGAAAGGCA TTCTTTCATT TTTTTCTTTT TTTTTTTTTT 007200
007201 TTTTTATGAC TTGCAGGCAC AATATCTAGT ACTGCAACTG CCAGAACTTG GTATTGTAGC TGCTGCCCGC TGACTAGCAG 007280
007281 CTGGACTGAT TTTGAATAAA AATGAAAGCA TTAAAGGGTT TCCCTACAAA ACATTTTTCT TTAAAATACT TTTGAAATGG 007360
007361 CTATAAGCAG TTGACTTTCA CCCTTGGAGA GCATCACACT GTGTGAGGTT CAGTGATTGT TGACCCTCCC CAGCCCCTCC 007440
007441 TGCTTCTTTA AGTTATCTGT GTGCGTGCGC TTCCTCTCAA TCTTCTTTGC ACGCTCATTT CTTTTTCTCT GACCCATGAG 007520
007521 AAAGGAAAAC TTACTGATGA TAATTTTTAA ATAGTGTAAT TTATTCATTT ATAGCATGTC AGGATAAATT AAAAGAACAT 007600
007601 TTGTCTGGAA ATGCTGCCGG GAGCCTATTG TGTAAATGTA GGTATTTTGT AAAATAACCT TGAAATTGTA AATTGACACG 007680
007681 TGTTTGGTCA GATTGTGTCA AGTTTAATTT GTTTTGTTTT CTTTTTTCTT TTTTTTATTT GAAAACTACT TTAGCAATAA 007760
007761 TTAATTCCAT GATTATCACA TTCTGCCATT AAGGGATATT AGTACCGTAA TACTGAAGAA ATTTTATTAA GTCTGAACTT 007840
007841 CTGGGGTAGG CAGCTTCTTT GTTTCTTTTC TATCCACCCT TGTCGGTTGA GGTATTTGTT TCTTGACTAA TAAACCCTTT 007920
007921 GATACTTTTA GCCAGAAATC AGTCTCATAA AGCTATTTTT GAGTATAGTT TGTGTAAAAT AAAAATGTTT AGCTTTGGTA 008000
008001 ATAACTTCCA AGCTGAACTC CCTCTAGCAA GATATTTTTC AGTGCTTTTA TTTACTATGC ACTTAGACTA TGCACTTTTT 008080
008081 CTGAAATATT TTTGTAACAC TTTTTTGTAT TTTTGCCATT TGAAAAGGTT GTGGTGTAGT TGGTCTGTAA TTAAGTTGCA 008160
008161 GATTTAAAAC TGCTGTTAGC TTTGTAAATC AAAATATAGG TGTTTTTTGT CCTGGTATAT CGTCATTCCA TCTGCAGCTG 008240
008241 GAGCTGGAAT CCCATTGATC TTCTAGCTAC CATTCATTTT CTTCACTGTT CACAAAAGAA GAGTGTGAAA TTCAGTGAAT 008320
008321 GCTGTTACTA ATCCTGTTAC GAGATGAATC TCATTTCACC AAAATTAAAT TATGTTTTTC CGCTAAAATG ATGATACAAG 008400
008401 TTGAAGACAC ATCACTCTGA AATTGGAAGA CCTCACCACT TAAGGCTCCA CAGTGGCTTA CTCAGCTGAA CTCTAGGTTA 008480
008481 CTACTCTTTA CTTTGTTCAC CCATTGGGGG GTGCAGTTTT TTTAAAATGT TGGGAGATGG CCATTCTAAC TACTGTTGAA 008560
008561 TGTCTCTGTT TTGGGAAGGT ATAACAAGAA ATAAAAAAGA ATATATATGA AGGGAGAGAC TGGTTATCTC CTCCCA
[back to top]

Predicted Small Protein

Name ENST00000499521.2_smProtein_5978:6223
Length 82
Molecular weight 10020.3807
Aromaticity 0.234567901235
Instability index 63.4890123457
Isoelectric point 9.09820556641
Runs 15
Runs residual 0.0430054778841
Runs probability 0.0548371901314
Amino acid sequence MSHYNYWLSSTQFPYFGCNLKFLTWNFNFFFVLIFYQVSKHELRNRRSRADDRSSICFSP
NLEILVHMYTSQWLWTTIYLV
Secondary structure LLLEEEEELLLLLLLLLLLEEEEEEEELEEEEEEEEEELLHHHHLLLLLLLLLLLEEELL
LLEEEEEHHHHHHHHHEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL
LLHHHHHHHHHHHHHHHHHHL
PiMo ooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii
iiTTTTTTTTTTTTTTTTTTo