ENST00000499521.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000499521.2 |
Source |
Gencode19 |
Same with |
lnc-IL17B-2:1 |
Classification |
sense |
Length |
8636 nt |
Genomic location |
chr5-:148873877..148884233 |
Exon number |
2 |
Exons |
148873877..148878856,148880578..148884233 |
Genome context |
|
Sequence |
000001 CAAATGCCAT TGAAACCGCT AGTCTTATTT CCTTTCTACT TTTCTTTGGC ACTCTTACTG CCTGTAAGGA GTAGAACTGT 000080
000081 TAGGGCACAC TGTTGCTATA CAGTTTAACT CCCATTTTCA TGTTTTGTCT TTCTTTTCCC ATTTCTGGGG CTTACCTCCT 000160 000161 GATACCTGCT TACTTTCTGG AAGTAGTGGG CAAGTAAGAT TTGGCTCTTG GTTTCTAATT TTTAAATTTC TGAATACTGC 000240 000241 CCTAGTCTGA ACTTGGCCTT TATAGATTAA TCTTTGCTTC ACATTTTTAG TGTTGTATTT AAACTATTTT ATAATTTAAA 000320 000321 AATAGATTCT AATCTGAAGA TACTTTTCAA GAAATATTAT TAACTGATGT CATCCTCATC CCAGCAGCTC ATCTGTTAGG 000400 000401 AATGAAGTTG AGATGCTTCT ATTCCATGTT TTTGTATTTG GGAAGGATTC AAAGTTGAAG GTTTATTGTC GTTGGGTTTT 000480 000481 TCAGATGGTG ACATGTAAAC TCAGGATAGC AAACCCTAAT GTTCACACAG TGCTCTGCCT CTGCATCTCA GTTGGGATAG 000560 000561 TTGCTCCTTT TGAGTGTTTT AATCATCGTA TAACTAATCA TAGTGCCAAG AAGTTCATAA TGTGTTATGT AGCTAATGTC 000640 000641 ACTGAAAAAC AGTCCTACCA TTTTAGGTAA GACCAAACAG AGTCTCTAAC CCAAGGACTT GTTACACCTG ACAACCTATA 000720 000721 GTATATTTGC TTTTTCTCAC AAAATGAAAC CAATTTTGCC GAAAGCTAGC TGGGATAATA GGATCATCAC AAGTTGCAGT 000800 000801 TTCTATAACT AAAATTAGAT TGAAATCTCT TCTGACCTAG AACATTTTAC TTCAGGCATT CAGCAGATTT CAGAAAGAAT 000880 000881 TACCTTATTT TAAGTTAGTT TCTTTGTTAG TTTACTGTGT GTCTCTTATT CAATAAACAA GCAGAATTTG TGTCCTGCCC 000960 000961 TATCCATGTC TTAAAGATGA GAAGTTGGAT CCACTGAGTT AGTTTCATTG GGGCGGGGGA AAGAACTGTA ATTAAACTTG 001040 001041 TTTAATCCTT ATTTTGTATT GTAGCTATTT TTTGTAAAAG CAACTTAAAA TCTTTTAAAA ATTTTATAGT GACATTAGAG 001120 001121 ACAATGGTCA TACAAATTAT CACATAAACA TGGACTTGAA AAATTAGGCT TTTCATAAAA CACATCACAT GTCATTGACT 001200 001201 GCTTTTTAGA AATACACTTC CAAGGCAGTA CATCTGTATT GCTACTGAAA AGTGCCATTT CACAGAACAC AGACTTCTTT 001280 001281 TTGCTCTTTG ACATCTTGAA AACATCTGTT TTTCTTTTTT AATACAAAAC TTTGTGCTCA AGACAAATCT TACATGAAAC 001360 001361 TCTCATAAAC CATGAAAATG TAGCTGGCCT TCGGGCCTTA GGCATGAAAT AAGCATGAGG AACATATTCC CCTAACTTCT 001440 001441 ACCCCCAGCC CAGCAAGTTA TCCTTTAAGA AATCTCCTAG GAATTCTGGA GTTTGAAAAC AATTGCTCTA TGTTATTCCT 001520 001521 GCTTCCAGTC TCTAAGTAAC AAGGGCATTT AAAAGCATAG TCTCTTAAGG TCCACTATAG TGGTTCTTTA TTTAAGGAAT 001600 001601 AACTCAGCTG GGTGCAGTGG CTCACGCCTG TTATCCCAGC ACTTTGAGAG GCTGAGGCAA GCAGATCACT TGAGGCCAGG 001680 001681 AGTTCGAGAG TCTGGCCAAC ATGGTGGAAA CCCATCTCTA CAAAAAATAC AAAAATTAGC CAGGTGTGGT GGCGTGCACC 001760 001761 TATGGTCCCA GCTATTTGGG AGGCTGAGGC AGGAGAATTG CTTGAACCTG GGAGGTGGAG GTTGCAGTGA GCCAAGATTG 001840 001841 TGCCGCTGCA CTCCAGCCTG GGTGACAGAG TGAGACTCTG TCTCAAAAAA AAAAAAAAAA GGAACTCATA CAGCTCAATG 001920 001921 ATTCATTGAT CCCAATAATA AATCGTTTTA ATAATGATGA AAACATCCTA CTGGGGTTTT CTTGTTAAAA ACTTTAGGAC 002000 002001 AGGCGCAGTG GCTCATGCCT GTTATTCCAA CACATTTGGG AGGCTGAGGT GGGAGAATTG CTTGACCCTA GGAGTTCTAG 002080 002081 ACTTGCCTGG GCCACATAGT AAGACCCTGT CCCAGCTCCC TCCAACATCG TCCCCAACCC CCCCCCCCCC AAAAAAAAAA 002160 002161 AGCGCCAGGC GCAGTAGTGA GTGCCTGTGA TCCCAGCTGT GTTGGGAGGC TGAGGTGGGA GTATCACCTG AGCCCTGGAG 002240 002241 GTTGAGGCTG CAATGAGAGC TGTGATCATG CCACTGCACT CCAGCCTGGG CAACAGATGA GACCCTGTGT CACAACAAGG 002320 002321 AATTTTTAGA AGGTGCTTTT TATATTACTC TTCACAGAGT TAAATTTTCA GAGGATTTAG TATTATTGAA CTAAGTTTCA 002400 002401 TAAGTGTATT TTAAGCAAGT AAATCTCTAA TGTAGGAAAA TCCCCAAAAT GGTAGCATTT ACTAATGTTT TATATGGTAA 002480 002481 TTTTTGAAAA ATATATCTGA TATTTCTTCA GTAAAAATGG TGTTGTTTTA ATAACTTAAT AAGAATGTTT AAAGATTCTT 002560 002561 TAAGTCTGGC TTATCTAGCT AATGTGGGCC TATTAAATAA TAGGCAGACT TCTGCCTTCC TTATATTCTT TAGATCTTTT 002640 002641 CAAATACTCC ATTCCAATAT CCATCAAAAG ACTTCTCTTT ATGCCACTTA TTATCTATAC TAGTTTTTAA TGTTCAATTA 002720 002721 CTACAAGATT ATAATTACTG TTTTTATTCA TGTTCCCAAG AAAAATACAT AAGATTCACA CCCAACACAC TTCGAAATTT 002800 002801 ATTTCACTCC CTTTGACTAT ATGTGATTAT CAAAAAAGTA TTTTTCAAGA TATTAAAAAT AAGTAAAGGA AAATGAAATA 002880 002881 TTTTTAGGAC ATTCAAAATC TAATGAAGTT CAGTGTTTCT TTAATTGAGG GCAGGCAGAG GTGGGGGAGA ATTTCAGAAG 002960 002961 GTAGTGAACC CAAAGGTGGA TTCTTGGATA ATTCTACTAT TCTGTACTCT CATCATCTTA ACCCATCTGT TTACTACCCT 003040 003041 AACCATAGTT ACTAAGCAGA GTTTTATCAT AATAATATAG ACAGCTCTCA AAGTATTGAC ATTCAGAGGG GATTACAAAT 003120 003121 ATTATTTTTC TATCATATTG ACCTACCATG TCCACAGTCT TCCTTGAATT ACCTTCCAGT TTTACTGGGC TGCATCTACC 003200 003201 GTTTATGTCT AGTTTGACTT TTTCTGAGTT CACCAATTGC TGCTAGGAAT GTGCTGGTCA CTCAGCAGCA CACCCACATC 003280 003281 ACAGGGGAAG ATTTTGAAAT ACCTGGACAG TCTGAACACA CTGCTCTGAA TACACTCAAT TCTAAGAAGT ACCAGGGAAC 003360 003361 CGCATCTTCT TGCTGAAATC TTGAATTTTT GTCAGCTTTT TTTTTTACTG TGGACAGTAA AGCTGGAAAG ATCTAAATAA 003440 003441 CCCAACAGGA AATGCGGATG AAAGTGCAAG AGTTGGTTTG TGGTCATCTG GAGTCCATGT CTCCAAGACT GCTGGACCTT 003520 003521 CAAATTCTGC AACTTGTTAG ATCATCTGGA TGATAGCACA ACTGTTAGAA GACCTAGAAG AATACAGCGT TGCTATGACT 003600 003601 CAGTGGTGTT GAATGCAGAC CATCTACCAG CTGGGGAAAG AATCAATTAT AAACAGGAAT AAAGGGATTC ATTCCTCATT 003680 003681 TTAACTGATG TTACAGTGAA GATGGGTTCT TGAACTCTTG GAAGCCTGGA TGAGCCACCT AATCTGCAAG ATAAAAACCA 003760 003761 AAGACCAATG CGTATTGGGG AAAAGAATGC TTAGTACTGC AAGACTGTTG AATACCTGTT GAATATTCCT ATTGAGGTTT 003840 003841 TTTCCTAAAC ATACTTCAGT AACATCTTAG GACAATTCAC TGGAGAAATG TTGATCCCTG GCTGGAATGT CATACCATTG 003920 003921 ACCCATTTGA AGAGTTAAAG CTGGATTTGA CTGCTCTATT CTACCAGGAA TATTGTTAGG GTAGCCTTTT ACCAGTTTCT 004000 004001 AAACAATTGT AATCATTTAT TGACTCAGCA ATTCCTCAGA TAACAGGTCA AAAGATGTAC AGATACATTC TGAAGTTTTC 004080 004081 TTGCTATTAA AGGCACAAGA GTTTCCTTGT ATTTTGACTG ACAATGTAGC ATGTTTCCAT TTTAGTTTGT TAGTGATGGT 004160 004161 GGTTTTCCCT TTGAAAGCCA TTTGGTATAT TCACCATAAC AATTAGTTTA ATATGATTAC ATAAGAAAAC TATGATAAAA 004240 004241 CCCAGCAATT TTAGTAGTTG TGAAAATACG TTTTTTAAAT CATGTTTAAG AAGAATTGCA AGACTTGAAA CCAAATCCTG 004320 004321 ATGGGGGAAT TCTGTTTAAT CCTGTTTAAT CTGTTTAATT TCTGTTTAAT CCTTAGTTTC TTAACCTGCA TAGCTTATCC 004400 004401 TGTATTGTAC TTTTTTTCTT TTTTAAACTC CCAAACAAGA AGCTTGAAAC TTTTCCTGTA TTTTAAAATT GAAATTTGGT 004480 004481 CACAGGGTAT AGTCAGATTT TTATTAAGGT TTGGTTTGAC AACCTTTAAA AGAAAGGTTT ACCTCGCTAA TACTTCTTAA 004560 004561 TAACATGCAT CAAATGATAT TCCCTATGGT GAAGTATATT CTCAAAGTTA TGTTATCTTT CATTTTTGGC ATTTGGTGCT 004640 004641 TATGGACTTA GTACCCAGGC AACAAAGATC TATTATGCAC CTACTCTCTT GTATGTTCGC TATTATTTCC CAAAAAAAAA 004720 004721 AAGGGGCATA TATGCATAAG AAATAAATAT TAGAATTATT TTGTTTCTCC CACAAAGCCC ATGGGAGATG GCCCAACAAA 004800 004801 TGTTTAAAAA GTAAAAGAAG CTGGGCACGG TGGCTCCCAC CTGTAACCCC CACACTTTGG GAGGCCATGG CGGGTGGATC 004880 004881 ACGAGGTCAG GAGTTTGAGA CCAGCCTGGC CAACACAGTG AAACTGTGTC TCTACTATAA ATACAAAAAT TAGCCAGGCA 004960 004961 TGGTGGCAGG CACCTATAGT CCCAGCTACT CAGGAGGCTG AGGCAGGAGA ATCGCTTGAA CCCAGGAGGC AGAGGTTGCG 005040 005041 GTGAGCCAAG ATCATGCCAC TGCCCTCCAG CCTGGGTGAC AGAGCGAGAC TGTCTCCAAA AAAAAAGAAA AAAGAACTAA 005120 005121 AAGAAAAGGA GCAGTTTATG ATTGAAGAAA ACATGACCTG GGCTGAAGAA GTGAGGATTG ATTGGAGTGG GCTAGAATGA 005200 005201 GCTATAGTTT CTAGCTCATT TGTAAGGAGG TAGACAAAGG AGCATTGGTG CCTCAGAGTG GGTGTCTGGT GAGAGGAAAA 005280 005281 ACGGTGCTTA AGAGATTTTC AGGCTATTGC TGTGGGACAG GCATATTTTC TCCCTTTGCC TTTAGCTGTA GATAAAGTGT 005360 005361 GGTTATGACC TGAGGCTTCT TGTATTCAAA CTTGGCCTAG GGCCTATGTA GAGGCCCTAG GGTCTACTTG TGGTGGAGGA 005440 005441 GGGAAGTATT TGTAGAATGT GTAGGCTTGA GAAGTAAATA AAGCCAAAAA AGCATCACTT GCTTACATTT TTAAATGAGT 005520 005521 CACAAAACAA TCTTTCTAAT GCGGCCGGTA AAGAAGTTTT AAAGGTCTAA GGTTTCTCTA CAGAAATTAC ATGCTTCTCA 005600 005601 GGTCTTTGTT TAGTAAAATA ATACAGATAA TTATGCTTTG AATGCATTTA TTATTAAAGC TAACCGTTTT AATTTGTGTC 005680 005681 AGAAATAATT TGTGCCTATG GTAGGATTAA AATTGTATTC TTTAGTTAAA GCAAAGCAAT CTGTTTTTCA TTGATTTGAT 005760 005761 AAATATGTGA ATGCCTAATA TGTTCTGCAT ATGTAAAAAT GCAGAAACAT GCTCATTTGA ATTACTAATA ATTATTTTAG 005840 005841 TATGCTGAGA GGCTTTGAAT TCACTGTACC ACTCCTTCCT AGAGTCATTC AAAACAGAAA AAATTAGTTT TAAGTATAGA 005920 005921 TTCATGTTTT TCTGTTTTAA AAAGTTGAGC TAATACTTTT CACAAGAGAC GAAATAACAT GAGCCACTAT AATTATTGGC 006000 006001 TCAGTTCCAC CCAATTTCCA TATTTTGGGT GTAATTTAAA ATTTTTGACT TGGAATTTTA ACTTTTTTTT TGTTTTGATT 006080 006081 TTTTACCAGG TTTCTAAGCA TGAATTGAGG AACAGAAGAA GCAGAGCAGA TGATCGGAGC AGCATTTGTT TCTCCCCAAA 006160 006161 TCTAGAAATT TTAGTTCATA TGTACACTAG CCAGTGGTTG TGGACAACCA TTTACTTGGT GTAAAGAACT TAATTTCAGT 006240 006241 ATAAACTGAC TCTGGGCAGC ATTGGTGATG CTGTATCCTG AGTTGTAGCC TCTGTAATTG TGAATATTAA CTGAGATAGT 006320 006321 GAAACATGGT GTCCGGTTTT CTATTGCATT TTTTCAAGTG GAAAAGTTAA CTAAATGGTT GACACACAAA AATTGGTGGA 006400 006401 GAAATTGTGC ATATGCCAAT TTTTTGTTAA AACCTTTTGT TTTGAACTAT ACTGCTTTGA GATCTCATTT CAGAAGAACG 006480 006481 GCATGAACAG TCTTCAGCCA CAGTTGTGAT GGTTGTTAAA TGCTCACAAT TGTGCATTCT TAGGGTTTTT CCATCCCTGG 006560 006561 GGTTTGCAAG TTGTTCACTT AAAACATTCT TAAAATGGTT GGCTTCTTGT CTGCAAGCCA GCTGATATGG TAGCAACCAA 006640 006641 AGATTCCAGT GTTTGAGCAT ATGAAAGACT CTGCCTGCTT AATTGTGCTA GAAATAACAG CATCTAAAGT GAAGACTTAA 006720 006721 GAAAAACTTA GTGACTACTA GATTATCCTT AGGACTCTGC ATTAACTCTA TAATGTTCTT GGTATTAAAA AAAAAGCATA 006800 006801 TTTGTCACAG AAATTTAGTT AACATCTTAC AACTGAACAT GTATGTATGT TGCTTAGATA AATGTAATCA CTGTAAACAT 006880 006881 CTATATGATC TGGGATTTTG TTTTTATTTT GAAATGGGAG CTTTTTTGTT TACAAGTTCA TTAAAAACTA AAAACTGTTT 006960 006961 CTGTAAGGAA ATGAGATTTT TTTTAAACAA CAAAAAATGC CTTGCTGACT CACTATTAAA TAAAAATCTC CCCAATTTTT 007040 007041 TGATAGACTA CTTCAAGCCA TTTGTTACAT GGTATTCCTT TGCAAGTCAA TTTAGGTTTC GTGTTATAAC TTTTCCTCTT 007120 007121 TTTTTAAGAA AAATGAAAAA AGTAATTCTT TTGTCTGAAG GGGAAAGGCA TTCTTTCATT TTTTTCTTTT TTTTTTTTTT 007200 007201 TTTTTATGAC TTGCAGGCAC AATATCTAGT ACTGCAACTG CCAGAACTTG GTATTGTAGC TGCTGCCCGC TGACTAGCAG 007280 007281 CTGGACTGAT TTTGAATAAA AATGAAAGCA TTAAAGGGTT TCCCTACAAA ACATTTTTCT TTAAAATACT TTTGAAATGG 007360 007361 CTATAAGCAG TTGACTTTCA CCCTTGGAGA GCATCACACT GTGTGAGGTT CAGTGATTGT TGACCCTCCC CAGCCCCTCC 007440 007441 TGCTTCTTTA AGTTATCTGT GTGCGTGCGC TTCCTCTCAA TCTTCTTTGC ACGCTCATTT CTTTTTCTCT GACCCATGAG 007520 007521 AAAGGAAAAC TTACTGATGA TAATTTTTAA ATAGTGTAAT TTATTCATTT ATAGCATGTC AGGATAAATT AAAAGAACAT 007600 007601 TTGTCTGGAA ATGCTGCCGG GAGCCTATTG TGTAAATGTA GGTATTTTGT AAAATAACCT TGAAATTGTA AATTGACACG 007680 007681 TGTTTGGTCA GATTGTGTCA AGTTTAATTT GTTTTGTTTT CTTTTTTCTT TTTTTTATTT GAAAACTACT TTAGCAATAA 007760 007761 TTAATTCCAT GATTATCACA TTCTGCCATT AAGGGATATT AGTACCGTAA TACTGAAGAA ATTTTATTAA GTCTGAACTT 007840 007841 CTGGGGTAGG CAGCTTCTTT GTTTCTTTTC TATCCACCCT TGTCGGTTGA GGTATTTGTT TCTTGACTAA TAAACCCTTT 007920 007921 GATACTTTTA GCCAGAAATC AGTCTCATAA AGCTATTTTT GAGTATAGTT TGTGTAAAAT AAAAATGTTT AGCTTTGGTA 008000 008001 ATAACTTCCA AGCTGAACTC CCTCTAGCAA GATATTTTTC AGTGCTTTTA TTTACTATGC ACTTAGACTA TGCACTTTTT 008080 008081 CTGAAATATT TTTGTAACAC TTTTTTGTAT TTTTGCCATT TGAAAAGGTT GTGGTGTAGT TGGTCTGTAA TTAAGTTGCA 008160 008161 GATTTAAAAC TGCTGTTAGC TTTGTAAATC AAAATATAGG TGTTTTTTGT CCTGGTATAT CGTCATTCCA TCTGCAGCTG 008240 008241 GAGCTGGAAT CCCATTGATC TTCTAGCTAC CATTCATTTT CTTCACTGTT CACAAAAGAA GAGTGTGAAA TTCAGTGAAT 008320 008321 GCTGTTACTA ATCCTGTTAC GAGATGAATC TCATTTCACC AAAATTAAAT TATGTTTTTC CGCTAAAATG ATGATACAAG 008400 008401 TTGAAGACAC ATCACTCTGA AATTGGAAGA CCTCACCACT TAAGGCTCCA CAGTGGCTTA CTCAGCTGAA CTCTAGGTTA 008480 008481 CTACTCTTTA CTTTGTTCAC CCATTGGGGG GTGCAGTTTT TTTAAAATGT TGGGAGATGG CCATTCTAAC TACTGTTGAA 008560 008561 TGTCTCTGTT TTGGGAAGGT ATAACAAGAA ATAAAAAAGA ATATATATGA AGGGAGAGAC TGGTTATCTC CTCCCA |
Predicted Small Protein
Name | ENST00000499521.2_smProtein_5978:6223 |
Length | 82 |
Molecular weight | 10020.3807 |
Aromaticity | 0.234567901235 |
Instability index | 63.4890123457 |
Isoelectric point | 9.09820556641 |
Runs | 15 |
Runs residual | 0.0430054778841 |
Runs probability | 0.0548371901314 |
Amino acid sequence | MSHYNYWLSSTQFPYFGCNLKFLTWNFNFFFVLIFYQVSKHELRNRRSRADDRSSICFSP NLEILVHMYTSQWLWTTIYLV |
Secondary structure | LLLEEEEELLLLLLLLLLLEEEEEEEELEEEEEEEEEELLHHHHLLLLLLLLLLLEEELL LLEEEEEHHHHHHHHHEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL LLHHHHHHHHHHHHHHHHHHL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii iiTTTTTTTTTTTTTTTTTTo |