ENST00000499481.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000499481.2 |
Source |
Gencode19 |
Same with |
lnc-CTDSP2-1:3 |
Classification |
intergenic |
Length |
3507 nt |
Genomic location |
chr12-:58263618..58290265 |
Exon number |
4 |
Exons |
58263618..58264164,58265779..58265871,58266636..58266759,58287523..58290265 |
Genome context |
|
Sequence |
000001 GGGCGCAGGA GGCCCACTCC CCCGACTGGG TCGGCTGCTA CCCTCAGGCC AGGGTGTGCG GTGGAGAAAC TGAGGCTCTC 000080
000081 CTCCAGCTGC TCTGGGAGAA AGGAAAGCCG GGGACCCCAC ACACTGGCGT CTGTGTCCCA GAACACCCAG CAGGGGGGAG 000160 000161 AGCAATTTAA GAAATAATCT GGTTGGCAAA GGGCGTCATG AAAATCAGCC ATTTCTAGAG CTGAGGGGCG GTGGTGTTTA 000240 000241 GCCCAGAGGA CCTAGCTAGC TTTCAGGGAA AAAACGGATG TGGCCTTTCA GGCAGAGCCC AGAAAAAAAG ACCTGTGATT 000320 000321 AGGAGACCCT AAGAACCAGC AAAGAACTTC TAAATATTGG AGGGGAGGTG GTGTAGCTGC AAAGAGCCCA CACCCACGCT 000400 000401 GAGTTAGCTC TGACAGCTTC TAAAGGAAAG GGAGATGCTT AGATTATCCT GAGAAACTGG AGGATCTCCT GAGTGACCTG 000480 000481 AAAAGGTCAT CTCACTCATC CGCCTGTGGC TGGAGTAAAA TATACGGAGC CCATCCCAGG ACTCCCAGTG GGAGAGGATG 000560 000561 AACAATCACT TCTGAAACTA AGCTCAGGAG AAGTTGAGGA GCTTTCTCAA GGGAGAAGAG CTGCCAGGAG AAGCAAGGGT 000640 000641 CTCTCTCAGT GCCACTTCCT TTCCATAAAC CATAATGATG GGCTCTGAAA TTGTCCAAGG AAGGAAACCC ATGGCTTCTC 000720 000721 AGAGCAACCA GTACCAGGGG TTCAAGTTCG TCAGAGAGCA TGTTGAAGTT CTATTTTATT TTCCTCCATT GGTCACCTGC 000800 000801 TGGGGATGAG GCATAGGCCT AGTGTTGTCA CCTGGAGGAA AGACATGATG CAATTAACAA AGCTGCTAAT GCCTCCTCTC 000880 000881 ACCCTGACCT CTGCTCTTAG CCTCTGTACC AGCCCACCCT CTGCATCCTG CACAGCCAGC TGGGCCCTGA GAGGTCCTCC 000960 000961 TGGCCCTCCT CCCACCCGTC CTTTGCCTGT CAGATGGAGG GTCTTTATGC TGAGATCACT GGAGAAACAG AGCTTCAGTG 001040 001041 CACTCTGTCA CACCAGCAAT GAGAAAACCT TTCTAAAGGG GAAAGCTCAC AGTAGGCAGA TTCCTGATTA TTCCATAAAT 001120 001121 CCTGGAGAAG AAAAATATAG GTTAACATAA GGATTCAAGA GGATGACACT CTGTGTGTTC AGGCATAAGC TAAATTCACT 001200 001201 CATTCCGTTA TTTAGTGATT TTGTTATTTA GGGTGTGCCT GGCACTGAGC TAGGCGCCGG GGCTACCACA TGAATAAGAC 001280 001281 AGAGATGGCC CCTCCCTGAA CCCTGCCGCA TGCCCTTCCA CTCTGCCTCC CAGGACAGGA GGCTATGATA CACTTTCCTC 001360 001361 TCCTGCACCA GCATATGTCT GTCTCCTTCC CAGCCCACCC CTAGCAGGTG TTGTCCCCAG CCCCAGCTGC TTATGTCTCG 001440 001441 TGTGTTCTGC CAAGAGCTGC TTCTGTCAGA AGGCACTAAC TCTCTGGTGA TTGGGTGGTG GATAGAAGAG GTAACCTAAA 001520 001521 GGCCTGTCCA GAAAATGAGA TCAAAGTTGG CAGCCTCCTG GGCCCCTCCC AAAAAAGGAT ATAGCCACCA CCATTTATAA 001600 001601 TTAATTCAGG CCCCACTTCA CTCTGTCCCA CCTGCTTTCT GTCTCTCTCT CTCTCTTTTT TTTTTTAAGA TCTTTTTCTG 001680 001681 ATATGCCTGG TTGCCCCAAT GCAAGTCTCC TCTTTCTGAA GCTTCCTGTG CCACCAGGGG CCTGTCCACC TCAGAGACCT 001760 001761 CTCAGGTGCA GCTCAGCTGC ATCCACAGGG GGTCCTGAGT CCCTAGGCCC TGCACAGATG TCTACCCAGG TTCTCTTGGT 001840 001841 CTCTTCCATA GCTATGAGGC CTCCTCATTG AGGGTGCCCA AACACCACCC TTAATCACAA GTTTGCCAGC CTCCACCTTC 001920 001921 TAACCCTCCT AGACCACATC AGCCCCTGCC TTATTCCAGT ATTTTCCTGA TTTCGCCTAT TTCCAGCTTC CCTCAGCCAT 002000 002001 TCACAAGCAC AGCCTGATGC TGTGCATAGG AAGACCTGGC AGTAAGCCTA TGGTGAACAA ATATTTTTAA TGAACAAACA 002080 002081 GAAATTATGG CCCCAAACTG AAAACACCCT GGAAGCCACA AACTCTGTTA CCTTCAAAAG AAGCCAGATC TGGACCGCTG 002160 002161 AGGTTTTTAA AAAATGCAAT GAGCGAATTA GTGAAATCAG TTCATCACGG ACACTGTGTC TTTCAGGAAA TGAAGCCTCC 002240 002241 GAAGAAAAAA GGGATCCTAG CCCCTGCCAA ATTCCATTCT GTTTCAAATT AGCCTTCCAG TAAAATGAGG GGGCTGTCCT 002320 002321 AACTGGTCTT TAAGGTCCTC CTAGTACCAG AGCTCTGAGG CTCTGTATTT CCCCTGAACA ACCTCTTGGA ACTCTCCACA 002400 002401 TTCTCATAAC AGAAGAAAAT GCATTTGTGC TCTGGGCTGA AGCTCAGAAG TGGGCTTTCA CGACAGTCAT TTCAGGCCTG 002480 002481 TTTCCCTTTT TCTCCCTTCC CTGAAAGGGC CTCTGGTCTT TCCCAAGCTG CCTGAGTAGA AGGAAACACA CAGCTCCCCC 002560 002561 AGAGCAGAGA GGCCCGCGAG AGGGAAAGCT GGCCCAGGCC CAGGGCAGGC TCGCCTCTGA CTCTGCAGGG ACATTATTCC 002640 002641 CTCCCAGCCA GCAGGGAACT TCTGGAACTT CTAAACAGCA CATCCTCGAG CCAGCCCAGG CCCCCACAGC ATCCTGCACC 002720 002721 CCAGGTTTAC AAGCTTTTTA ATGATGGAGT TTTGCTCTTA CGCCCAGGCT GGAATGAAGT GGCATGATCT TGGCTCACTG 002800 002801 CAACCTCTGC CCCACCAAAA TTCAAGCAAT TCTCCTGCCT CAGCCTCCCG AGTAGCTGGG ATTACAGGAA GATAACTTTG 002880 002881 GCAGCAGAAT GGGAAGAAGA TTGGATGGGA GAGAGATCAA AGGCTGGGAG ATTCTAAGAG GCTGTTGCAG TATAGTCGAG 002960 002961 GTTTGTCTGC CAGTGGAGTC CATGTTTCCA CCACTGTCCT ACATGGCCTC TCCTCACGAA TGGCTCCAAC CTCCTGGGTG 003040 003041 CGATGGATGA AGCCGGGTGC AGAGATGGAA AGAGCAGCCC AACTTTCCTA ACTGGAGGAC TGAAGCGAGA GCTCTCACTG 003120 003121 TCGGCCTAGT GTGGATTGAC TCCTTTCCAC CACATTCCCC AACCAAGGAC AGTCTATACC AAGCTCACAG CACTGAGGCG 003200 003201 CTGGGGGAGG GCCAGCCCAC ACCTAGCCCC GTCAATCTTG GTGGCATGGA CTCCCTCCTA AAGCTTTCTC AGGAGGCCCC 003280 003281 ATTTCCTACT GCAGCGGGGC AAGAATTCAG GAGGAGCCCA CTCAAAGGGG AGACAGAGGC AGTGCTCCCT GTGAGCAGCT 003360 003361 CTTCCTCCTC AGAGCTGTCA TGGACAATTG GAGAGAAAAA CCGGGACATT CTCCCCAACC AGGATATTTT GTATGCTTTG 003440 003441 CACTTACTGC TGCGTTCCCT TCATCTAAAA GCTCTAAAAT TTCAAATAAA AAGGTACAAT GAAAGCA |
Predicted Small Protein
Name | ENST00000499481.2_smProtein_2069:2302 |
Length | 78 |
Molecular weight | 8888.0022 |
Aromaticity | 0.0909090909091 |
Instability index | 57.2181818182 |
Isoelectric point | 8.43194580078 |
Runs | 14 |
Runs residual | 0.0457368718238 |
Runs probability | 0.0190463572817 |
Amino acid sequence | MNKQKLWPQTENTLEATNSVTFKRSQIWTAEVFKKCNERISEISSSRTLCLSGNEASEEK RDPSPCQIPFCFKLAFQ |
Secondary structure | LLLLLLLLLLLLHHHHLLLEEELLLEEEHHHHHHHHLLLEEEEELLLEEEELLLLLLLLL LLLLLLLLLLLEEELLL |
PRMN | - |
PiMo | - |