ENST00000499481.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000499481.2

Source

Gencode19

Same with

lnc-CTDSP2-1:3

Classification

intergenic

Length

3507 nt

Genomic location

chr12-:58263618..58290265

Exon number

4

Exons

58263618..58264164,58265779..58265871,58266636..58266759,58287523..58290265

Genome context

Sequence
000001 GGGCGCAGGA GGCCCACTCC CCCGACTGGG TCGGCTGCTA CCCTCAGGCC AGGGTGTGCG GTGGAGAAAC TGAGGCTCTC 000080
000081 CTCCAGCTGC TCTGGGAGAA AGGAAAGCCG GGGACCCCAC ACACTGGCGT CTGTGTCCCA GAACACCCAG CAGGGGGGAG 000160
000161 AGCAATTTAA GAAATAATCT GGTTGGCAAA GGGCGTCATG AAAATCAGCC ATTTCTAGAG CTGAGGGGCG GTGGTGTTTA 000240
000241 GCCCAGAGGA CCTAGCTAGC TTTCAGGGAA AAAACGGATG TGGCCTTTCA GGCAGAGCCC AGAAAAAAAG ACCTGTGATT 000320
000321 AGGAGACCCT AAGAACCAGC AAAGAACTTC TAAATATTGG AGGGGAGGTG GTGTAGCTGC AAAGAGCCCA CACCCACGCT 000400
000401 GAGTTAGCTC TGACAGCTTC TAAAGGAAAG GGAGATGCTT AGATTATCCT GAGAAACTGG AGGATCTCCT GAGTGACCTG 000480
000481 AAAAGGTCAT CTCACTCATC CGCCTGTGGC TGGAGTAAAA TATACGGAGC CCATCCCAGG ACTCCCAGTG GGAGAGGATG 000560
000561 AACAATCACT TCTGAAACTA AGCTCAGGAG AAGTTGAGGA GCTTTCTCAA GGGAGAAGAG CTGCCAGGAG AAGCAAGGGT 000640
000641 CTCTCTCAGT GCCACTTCCT TTCCATAAAC CATAATGATG GGCTCTGAAA TTGTCCAAGG AAGGAAACCC ATGGCTTCTC 000720
000721 AGAGCAACCA GTACCAGGGG TTCAAGTTCG TCAGAGAGCA TGTTGAAGTT CTATTTTATT TTCCTCCATT GGTCACCTGC 000800
000801 TGGGGATGAG GCATAGGCCT AGTGTTGTCA CCTGGAGGAA AGACATGATG CAATTAACAA AGCTGCTAAT GCCTCCTCTC 000880
000881 ACCCTGACCT CTGCTCTTAG CCTCTGTACC AGCCCACCCT CTGCATCCTG CACAGCCAGC TGGGCCCTGA GAGGTCCTCC 000960
000961 TGGCCCTCCT CCCACCCGTC CTTTGCCTGT CAGATGGAGG GTCTTTATGC TGAGATCACT GGAGAAACAG AGCTTCAGTG 001040
001041 CACTCTGTCA CACCAGCAAT GAGAAAACCT TTCTAAAGGG GAAAGCTCAC AGTAGGCAGA TTCCTGATTA TTCCATAAAT 001120
001121 CCTGGAGAAG AAAAATATAG GTTAACATAA GGATTCAAGA GGATGACACT CTGTGTGTTC AGGCATAAGC TAAATTCACT 001200
001201 CATTCCGTTA TTTAGTGATT TTGTTATTTA GGGTGTGCCT GGCACTGAGC TAGGCGCCGG GGCTACCACA TGAATAAGAC 001280
001281 AGAGATGGCC CCTCCCTGAA CCCTGCCGCA TGCCCTTCCA CTCTGCCTCC CAGGACAGGA GGCTATGATA CACTTTCCTC 001360
001361 TCCTGCACCA GCATATGTCT GTCTCCTTCC CAGCCCACCC CTAGCAGGTG TTGTCCCCAG CCCCAGCTGC TTATGTCTCG 001440
001441 TGTGTTCTGC CAAGAGCTGC TTCTGTCAGA AGGCACTAAC TCTCTGGTGA TTGGGTGGTG GATAGAAGAG GTAACCTAAA 001520
001521 GGCCTGTCCA GAAAATGAGA TCAAAGTTGG CAGCCTCCTG GGCCCCTCCC AAAAAAGGAT ATAGCCACCA CCATTTATAA 001600
001601 TTAATTCAGG CCCCACTTCA CTCTGTCCCA CCTGCTTTCT GTCTCTCTCT CTCTCTTTTT TTTTTTAAGA TCTTTTTCTG 001680
001681 ATATGCCTGG TTGCCCCAAT GCAAGTCTCC TCTTTCTGAA GCTTCCTGTG CCACCAGGGG CCTGTCCACC TCAGAGACCT 001760
001761 CTCAGGTGCA GCTCAGCTGC ATCCACAGGG GGTCCTGAGT CCCTAGGCCC TGCACAGATG TCTACCCAGG TTCTCTTGGT 001840
001841 CTCTTCCATA GCTATGAGGC CTCCTCATTG AGGGTGCCCA AACACCACCC TTAATCACAA GTTTGCCAGC CTCCACCTTC 001920
001921 TAACCCTCCT AGACCACATC AGCCCCTGCC TTATTCCAGT ATTTTCCTGA TTTCGCCTAT TTCCAGCTTC CCTCAGCCAT 002000
002001 TCACAAGCAC AGCCTGATGC TGTGCATAGG AAGACCTGGC AGTAAGCCTA TGGTGAACAA ATATTTTTAA TGAACAAACA 002080
002081 GAAATTATGG CCCCAAACTG AAAACACCCT GGAAGCCACA AACTCTGTTA CCTTCAAAAG AAGCCAGATC TGGACCGCTG 002160
002161 AGGTTTTTAA AAAATGCAAT GAGCGAATTA GTGAAATCAG TTCATCACGG ACACTGTGTC TTTCAGGAAA TGAAGCCTCC 002240
002241 GAAGAAAAAA GGGATCCTAG CCCCTGCCAA ATTCCATTCT GTTTCAAATT AGCCTTCCAG TAAAATGAGG GGGCTGTCCT 002320
002321 AACTGGTCTT TAAGGTCCTC CTAGTACCAG AGCTCTGAGG CTCTGTATTT CCCCTGAACA ACCTCTTGGA ACTCTCCACA 002400
002401 TTCTCATAAC AGAAGAAAAT GCATTTGTGC TCTGGGCTGA AGCTCAGAAG TGGGCTTTCA CGACAGTCAT TTCAGGCCTG 002480
002481 TTTCCCTTTT TCTCCCTTCC CTGAAAGGGC CTCTGGTCTT TCCCAAGCTG CCTGAGTAGA AGGAAACACA CAGCTCCCCC 002560
002561 AGAGCAGAGA GGCCCGCGAG AGGGAAAGCT GGCCCAGGCC CAGGGCAGGC TCGCCTCTGA CTCTGCAGGG ACATTATTCC 002640
002641 CTCCCAGCCA GCAGGGAACT TCTGGAACTT CTAAACAGCA CATCCTCGAG CCAGCCCAGG CCCCCACAGC ATCCTGCACC 002720
002721 CCAGGTTTAC AAGCTTTTTA ATGATGGAGT TTTGCTCTTA CGCCCAGGCT GGAATGAAGT GGCATGATCT TGGCTCACTG 002800
002801 CAACCTCTGC CCCACCAAAA TTCAAGCAAT TCTCCTGCCT CAGCCTCCCG AGTAGCTGGG ATTACAGGAA GATAACTTTG 002880
002881 GCAGCAGAAT GGGAAGAAGA TTGGATGGGA GAGAGATCAA AGGCTGGGAG ATTCTAAGAG GCTGTTGCAG TATAGTCGAG 002960
002961 GTTTGTCTGC CAGTGGAGTC CATGTTTCCA CCACTGTCCT ACATGGCCTC TCCTCACGAA TGGCTCCAAC CTCCTGGGTG 003040
003041 CGATGGATGA AGCCGGGTGC AGAGATGGAA AGAGCAGCCC AACTTTCCTA ACTGGAGGAC TGAAGCGAGA GCTCTCACTG 003120
003121 TCGGCCTAGT GTGGATTGAC TCCTTTCCAC CACATTCCCC AACCAAGGAC AGTCTATACC AAGCTCACAG CACTGAGGCG 003200
003201 CTGGGGGAGG GCCAGCCCAC ACCTAGCCCC GTCAATCTTG GTGGCATGGA CTCCCTCCTA AAGCTTTCTC AGGAGGCCCC 003280
003281 ATTTCCTACT GCAGCGGGGC AAGAATTCAG GAGGAGCCCA CTCAAAGGGG AGACAGAGGC AGTGCTCCCT GTGAGCAGCT 003360
003361 CTTCCTCCTC AGAGCTGTCA TGGACAATTG GAGAGAAAAA CCGGGACATT CTCCCCAACC AGGATATTTT GTATGCTTTG 003440
003441 CACTTACTGC TGCGTTCCCT TCATCTAAAA GCTCTAAAAT TTCAAATAAA AAGGTACAAT GAAAGCA
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Predicted Small Protein

Name ENST00000499481.2_smProtein_2069:2302
Length 78
Molecular weight 8888.0022
Aromaticity 0.0909090909091
Instability index 57.2181818182
Isoelectric point 8.43194580078
Runs 14
Runs residual 0.0457368718238
Runs probability 0.0190463572817
Amino acid sequence MNKQKLWPQTENTLEATNSVTFKRSQIWTAEVFKKCNERISEISSSRTLCLSGNEASEEK
RDPSPCQIPFCFKLAFQ
Secondary structure LLLLLLLLLLLLHHHHLLLEEELLLEEEHHHHHHHHLLLEEEEELLLEEEELLLLLLLLL
LLLLLLLLLLLEEELLL
PRMN -
PiMo -