ENST00000490856.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000490856.1

Source

Gencode19

Same with

lnc-CCDC71L-1:1,NONHSAT122648

Classification

overlapping(S)

Length

575 nt

Genomic location

chr7-:106012697..106372895

Exon number

5

Exons

106012697..106012884,106131456..106131576,106161175..106161265,106250843..106250909,106372788..106372895

Genome context

Sequence
000001 AAAGCAGAGC TCTGGCAAAT TGAGCTTCAC CCAATCTTGT CCTGCAGAGA AGCCAAGTCT CCACTGAATA CAAAGAGACA 000080
000081 CACCCTTCTG CCTGGACGGT ATCAGTAGGT TGAAATTTTT AAAAAATGAA ATAGAACCAC AAAGAAAATA TCAGAACACA 000160
000161 TTGCACTTAG TAAAGATGGA GTCTCGCTAT GTTGCCCAGG CTGGACTTGA ACTCCTGTAC TCAAGCCATC CTCCCGCCCC 000240
000241 TGCCTCTTGA AGTGCTGGGA TTACAGAACA AGGGGGAGTC TCCCTGCACA AGCTCTCTCT CTTTGCCTGC TGTCATCCAC 000320
000321 CTAAGATGTA ACTTGCTCCT CCTTGCCTTC CACCATGATT GTGAGGCTTC CCCAGCCACG TGGAACTGCT TCTTGAGGAT 000400
000401 AAACCATGTG TGATGCTCTT ATAAGAAGCC ACAAATACCC TGTATGGGAT GTCACAAATA TTCATCAGTA AGTGCTGACC 000480
000481 AACTCAAAGG CTTAAAATTC AACTCATTGA TGAATCACAG AAGATCCAAT GACTGACTCA GATCCACCCA CTGTTCTTCA 000560
000561 GTCCGTCTTA CCCTT
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Predicted Small Protein

Name ENST00000490856.1_smProtein_188:412
Length 75
Molecular weight 8157.5195
Aromaticity 0.0405405405405
Instability index 69.4864864865
Isoelectric point 6.37115478516
Runs 10
Runs residual 0.00751483190508
Runs probability 0.0482865218159
Amino acid sequence MLPRLDLNSCTQAILPPLPLEVLGLQNKGESPCTSSLSLPAVIHLRCNLLLLAFHHDCEA
SPATWNCFLRINHV
Secondary structure LLLLLLLLLHHHHLLLLLLHHHHLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLL
LLLHHHHHEELLLL
PRMN -
PiMo -