ENST00000490856.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000490856.1 |
Source |
Gencode19 |
Same with |
lnc-CCDC71L-1:1,NONHSAT122648 |
Classification |
overlapping(S) |
Length |
575 nt |
Genomic location |
chr7-:106012697..106372895 |
Exon number |
5 |
Exons |
106012697..106012884,106131456..106131576,106161175..106161265,106250843..106250909,106372788..106372895 |
Genome context |
|
Sequence |
000001 AAAGCAGAGC TCTGGCAAAT TGAGCTTCAC CCAATCTTGT CCTGCAGAGA AGCCAAGTCT CCACTGAATA CAAAGAGACA 000080
000081 CACCCTTCTG CCTGGACGGT ATCAGTAGGT TGAAATTTTT AAAAAATGAA ATAGAACCAC AAAGAAAATA TCAGAACACA 000160 000161 TTGCACTTAG TAAAGATGGA GTCTCGCTAT GTTGCCCAGG CTGGACTTGA ACTCCTGTAC TCAAGCCATC CTCCCGCCCC 000240 000241 TGCCTCTTGA AGTGCTGGGA TTACAGAACA AGGGGGAGTC TCCCTGCACA AGCTCTCTCT CTTTGCCTGC TGTCATCCAC 000320 000321 CTAAGATGTA ACTTGCTCCT CCTTGCCTTC CACCATGATT GTGAGGCTTC CCCAGCCACG TGGAACTGCT TCTTGAGGAT 000400 000401 AAACCATGTG TGATGCTCTT ATAAGAAGCC ACAAATACCC TGTATGGGAT GTCACAAATA TTCATCAGTA AGTGCTGACC 000480 000481 AACTCAAAGG CTTAAAATTC AACTCATTGA TGAATCACAG AAGATCCAAT GACTGACTCA GATCCACCCA CTGTTCTTCA 000560 000561 GTCCGTCTTA CCCTT |
Predicted Small Protein
Name | ENST00000490856.1_smProtein_188:412 |
Length | 75 |
Molecular weight | 8157.5195 |
Aromaticity | 0.0405405405405 |
Instability index | 69.4864864865 |
Isoelectric point | 6.37115478516 |
Runs | 10 |
Runs residual | 0.00751483190508 |
Runs probability | 0.0482865218159 |
Amino acid sequence | MLPRLDLNSCTQAILPPLPLEVLGLQNKGESPCTSSLSLPAVIHLRCNLLLLAFHHDCEA SPATWNCFLRINHV |
Secondary structure | LLLLLLLLLHHHHLLLLLLHHHHLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHLLLLL LLLHHHHHEELLLL |
PRMN | - |
PiMo | - |