ENST00000489670.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000489670.1

Source

Gencode19

Same with

lnc-TRAT1-5:2,NONHSAT091122

Classification

sense

Length

1331 nt

Genomic location

chr3+:109129009..109137864

Exon number

2

Exons

109129009..109129054,109136580..109137864

Genome context

Sequence
000001 GAGTGATGGC GGCATGGCGG TGCGGCGGCG GCTGCGAACA CCTTGAGGAC GGGTCGCATT ATGTTGCCCA GGCTGGACTT 000080
000081 GAACTTCTGG GCTCGAGCAA TTCTCCCACC TCAGCCTACC AAGCAGCTGG GACTACAGGT CTGCACCACT GCACCCCACC 000160
000161 CATTCAAGTC CACATCCCCA GAAACGAGGA TAATGCTTGG CACAAGGTAG GCATTTAATA CATATATGTT GAATGTATGA 000240
000241 ATAAATATAC TGGCTCTTTC TCAAGGCCAG AGAAGCCTCT CTTCATCTTC CCAGGACTTC CATTACCTAC TTTTTTTCTG 000320
000321 GAGGGCGGGG GGGAATAATT TCAACCTACA GAAAAGATGC AGATGCAAGA ATAATGAAAG GAACTCTTAG ATACCCTTTA 000400
000401 ACCAAATTCA CCAATAATGT TTTAGTTTGT AAAATCTAAT TTGAAATAAT TTTTTTAAAA ATTTATTTTC TCCTCAAATT 000480
000481 TCTTTTTCTT TTTCTTTGGC TTAAGAATCT TCATGTTTTT ATTTATTTAT TTATTTATTT TTTGTTTTTG TTTTTTTGAG 000560
000561 ACAGAGTCTC ACTCTGTTGC CCAGCCTGGA GTGCAGTGGC ATTATCTAGA CTCACTGCAA CCTCCACCTC CTGTGTTCAA 000640
000641 GTGATTCTTG TGCCTCAGCC TCCTGAGTAG CTGGGATTAC CAGTGCACGC CACCACGCCA GGCTACTTTT TGTATTTTTA 000720
000721 GTAGAGACAG GGTTTCGCCA TGTTGGCCAG CCTGGTCTCG AACTCCTGAC CTCAGGTGAT CTGCCTGCCA TGGCCTCCCA 000800
000801 AAGTGCTGGG ATTACAGGCT CATGCCTGTA ATCACTGCAC CCAGCCTCAA ATTCCTTTTT TACCATGAAA TAATTTCAAA 000880
000881 TTTATAGATT TGCAAGAAAA ACACAAATAA TACAAAGAAC TACCTTATAC CCTTCACCCA GATTTCCTGA TTATTAATCA 000960
000961 TTTACATTTG TCTGTTTTTC TTTCATGTAC CATTATTTTA TTCCTGATAC ATTTGAGATT AAGTTGCAGA CATGTTGACA 001040
001041 AATTACCCCT AAATACTTCA GTGTGTATTT CCAAAAACAA GGATACTTTT CCATAGAACC TCAATACTCT CATCAAAATC 001120
001121 AGGGTATTAA CATTGCTACA ATACTTTAAT CCACAAATTC CACTTAAATT TCAACAATTG CAGGGATAGC ATTAGGAGAA 001200
001201 ATACCTAATG TAGATGACAG GTTGATGGGT GCAGCAAACC ACCATGGCAT GTCTATACCT ATGTAACAAA CCTGCACGTT 001280
001281 CTGCACGTGT ATCCCAGAAC TTAAAGTATA ATAAAAAAAT TTTCAACAAT T
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Predicted Small Protein

Name ENST00000489670.1_smProtein_5:217
Length 71
Molecular weight 7407.1135
Aromaticity 0.0571428571429
Instability index 48.4614285714
Isoelectric point 5.99298095703
Runs 13
Runs residual 0.0408769448373
Runs probability 0.0496106966696
Amino acid sequence MAAWRCGGGCEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVHIPRN
EDNAWHKVGI
Secondary structure LLLEELLLLLLLLLLLLHHHHHHHHHHHLLLLLLHHHHHHLLLLLLEELLLLLEEEELLL
LLLLEEELLL
PRMN -
PiMo -