ENST00000489670.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000489670.1 |
Source |
Gencode19 |
Same with |
lnc-TRAT1-5:2,NONHSAT091122 |
Classification |
sense |
Length |
1331 nt |
Genomic location |
chr3+:109129009..109137864 |
Exon number |
2 |
Exons |
109129009..109129054,109136580..109137864 |
Genome context |
|
Sequence |
000001 GAGTGATGGC GGCATGGCGG TGCGGCGGCG GCTGCGAACA CCTTGAGGAC GGGTCGCATT ATGTTGCCCA GGCTGGACTT 000080
000081 GAACTTCTGG GCTCGAGCAA TTCTCCCACC TCAGCCTACC AAGCAGCTGG GACTACAGGT CTGCACCACT GCACCCCACC 000160 000161 CATTCAAGTC CACATCCCCA GAAACGAGGA TAATGCTTGG CACAAGGTAG GCATTTAATA CATATATGTT GAATGTATGA 000240 000241 ATAAATATAC TGGCTCTTTC TCAAGGCCAG AGAAGCCTCT CTTCATCTTC CCAGGACTTC CATTACCTAC TTTTTTTCTG 000320 000321 GAGGGCGGGG GGGAATAATT TCAACCTACA GAAAAGATGC AGATGCAAGA ATAATGAAAG GAACTCTTAG ATACCCTTTA 000400 000401 ACCAAATTCA CCAATAATGT TTTAGTTTGT AAAATCTAAT TTGAAATAAT TTTTTTAAAA ATTTATTTTC TCCTCAAATT 000480 000481 TCTTTTTCTT TTTCTTTGGC TTAAGAATCT TCATGTTTTT ATTTATTTAT TTATTTATTT TTTGTTTTTG TTTTTTTGAG 000560 000561 ACAGAGTCTC ACTCTGTTGC CCAGCCTGGA GTGCAGTGGC ATTATCTAGA CTCACTGCAA CCTCCACCTC CTGTGTTCAA 000640 000641 GTGATTCTTG TGCCTCAGCC TCCTGAGTAG CTGGGATTAC CAGTGCACGC CACCACGCCA GGCTACTTTT TGTATTTTTA 000720 000721 GTAGAGACAG GGTTTCGCCA TGTTGGCCAG CCTGGTCTCG AACTCCTGAC CTCAGGTGAT CTGCCTGCCA TGGCCTCCCA 000800 000801 AAGTGCTGGG ATTACAGGCT CATGCCTGTA ATCACTGCAC CCAGCCTCAA ATTCCTTTTT TACCATGAAA TAATTTCAAA 000880 000881 TTTATAGATT TGCAAGAAAA ACACAAATAA TACAAAGAAC TACCTTATAC CCTTCACCCA GATTTCCTGA TTATTAATCA 000960 000961 TTTACATTTG TCTGTTTTTC TTTCATGTAC CATTATTTTA TTCCTGATAC ATTTGAGATT AAGTTGCAGA CATGTTGACA 001040 001041 AATTACCCCT AAATACTTCA GTGTGTATTT CCAAAAACAA GGATACTTTT CCATAGAACC TCAATACTCT CATCAAAATC 001120 001121 AGGGTATTAA CATTGCTACA ATACTTTAAT CCACAAATTC CACTTAAATT TCAACAATTG CAGGGATAGC ATTAGGAGAA 001200 001201 ATACCTAATG TAGATGACAG GTTGATGGGT GCAGCAAACC ACCATGGCAT GTCTATACCT ATGTAACAAA CCTGCACGTT 001280 001281 CTGCACGTGT ATCCCAGAAC TTAAAGTATA ATAAAAAAAT TTTCAACAAT T |
Predicted Small Protein
Name | ENST00000489670.1_smProtein_5:217 |
Length | 71 |
Molecular weight | 7407.1135 |
Aromaticity | 0.0571428571429 |
Instability index | 48.4614285714 |
Isoelectric point | 5.99298095703 |
Runs | 13 |
Runs residual | 0.0408769448373 |
Runs probability | 0.0496106966696 |
Amino acid sequence | MAAWRCGGGCEHLEDGSHYVAQAGLELLGSSNSPTSAYQAAGTTGLHHCTPPIQVHIPRN EDNAWHKVGI |
Secondary structure | LLLEELLLLLLLLLLLLHHHHHHHHHHHLLLLLLHHHHHHLLLLLLEELLLLLEEEELLL LLLLEEELLL |
PRMN | - |
PiMo | - |