ENST00000487567.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000487567.1 |
Source |
Gencode19 |
Same with |
lnc-HEATR1-2:1,NONHSAT010405 |
Classification |
intergenic |
Length |
1440 nt |
Genomic location |
chr1-:236686369..236687808 |
Exon number |
1 |
Exons |
236686369..236687808 |
Genome context |
|
Sequence |
000001 AGGGAACGCA ATGGAGGTCA CTCCACTGTC ACTACAAATT CCGGGAAGGA AACTTCCCCA GATTCCTCCA CTTGGAGGTG 000080
000081 GCGCTCGGCC TCAGGCTAGG AGGGAACAGG TGAGAAAGCA GCCCAGGTGG GGTGGGTTTG CAGCGAGGAG ACACCCCAGG 000160 000161 GCAAACAGCC TGACCCCAGC CAGGGATGTC CAAGAAAGGC CGCGACTCCT GATAATCCCT TATGCCCCGG AGCGCCTCGC 000240 000241 CTGCAGAGGC AGCGTCCCCG CCACCCAGCC CCGGCTCTGC CGCGGTGAGG ACCGGCGGGT CGGGGTGGAC TGGACACTGT 000320 000321 CCCACCCATC AAATGGTGAT TTAGGAGCCG TGACATCCGA ATGCCATCCT CCACTGGCGA GACCCTCAGA GCAGCCACGC 000400 000401 CTCTAGCGAC TGCCCCGCCA CCCGAGGCCG GGGGTCGCGC GACTCACCCA AAGACTGGTG TTTCAGGCGC TCCACGGAGC 000480 000481 AGGTTGTTTG TCAGCAGCTA AGTGCCGTCA GGGTTCCCGG CTCTGGCGTC CGTGGGCGGC TACGGGAAGC GACAGGAGTC 000560 000561 AGTCCTCGTT CACTTCCCGG CTCGCGCGCC TCACTGCTGT GGTCTCCCCA CCCTCCCCGC GCCCCGCCTT CTGTGTCTGG 000640 000641 GGCGTCCCTG GCGGCTCTGC TGGGTTTTGG ACAGGGACCC GCCGCTGATC GCCACCCAGC TCGGCCTCCT GCACAGCCTC 000720 000721 TGGAGCCTTG GACCGCGACT GGCTTGCTGT GGGACGAGCA CAGAGGGATA AGGACAAAGA ATGTGTCCTG GGTGGATCTG 000800 000801 GCTGCCTTTG CCCGGAAGGC GGAGTGGGGT GGGAGGTGGT AGGAAAATGG GAAGGAAAGA AAAGAAAGGT GGGCCGACGT 000880 000881 CCACCTGGCT GTTCCAGGCC TCCAGGTCTA GGAGGGAGGG CGCTCGGGGC TGGGACTTTT CAGGACCAGG GTGGTCACCG 000960 000961 CACAGGCCCC GCCTGCCTGG ACCAAGCGCT GGCCTTCCCG GGGCGCCCAG GTCCACGGGG TCAACGCCAG GGTTTTCTCA 001040 001041 GCTTCCTCGT CTGCCTCGGA TCCAAGTCCA GACAGTGCCA GAAGAGACTT GGAGGCGCTG CTTTTTGACA GTACACACCT 001120 001121 CTGTATGCAG GTGAAACGGT GGGGGAAGGG TTCAGTACGC TGGACTGTGC CCAGCCCAAG CTCCCCATCC GTTAGTGATA 001200 001201 ACTTGGACTC GCAGCCACTC CGCGTCACTC GCCAGTTATC CTGCGTGTGG GTGTTTTCTC CAAATTGGAC ACTTAGGGAA 001280 001281 CAGTTTAAGC AGTATGGAGC ACAATTCTGT GCCTATTAGA TGCTCTTAAA TACCCGACTT CTCAGGGCCC TACACTGACT 001360 001361 GATAGTTTGA CCTATTGGCT GTAAACACAC CAGCCAGAAA TACAAATAAA GTTAAACAAA GTCATGTCAG CCACTTGGAA 001440 |
Predicted Small Protein
Name | ENST00000487567.1_smProtein_1124:1318 |
Length | 65 |
Molecular weight | 7422.3596 |
Aromaticity | 0.140625 |
Instability index | 72.5703125 |
Isoelectric point | 9.89178466797 |
Runs | 11 |
Runs residual | 0.02328125 |
Runs probability | 0.0486261662733 |
Amino acid sequence | MQVKRWGKGSVRWTVPSPSSPSVSDNLDSQPLRVTRQLSCVWVFSPNWTLREQFKQYGAQ FCAY |
Secondary structure | LEEEELLLLLEEEEELLLLLLLLLLLLLLLLEEEEEEEEEEEEELLLLLHHHHHHHHLLE EEEL |
PRMN | - |
PiMo | - |