ENST00000474814.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000474814.1

Source

Gencode19

Same with

lnc-TAF12-1:3,NONHSAT001972

Classification

intergenic

Length

1903 nt

Genomic location

chr1-:28905051..28908383

Exon number

3

Exons

28905051..28905192,28906045..28906493,28907072..28908383

Genome context

Sequence
000001 TTTCTCCCCG CCGCATTCCC GGTGTCGACT TACTAGCTGC AAGCCTCTGC CTGCCTTCCT GCGCGCCGTT CCCCGCTAGT 000080
000081 CGCTGCTGCT GGCGCGCACT CGCCGGGTTT TTCCTCCCAC GGCCTCGAGA TGGTGGTGAA TGTGGCACGG AGGAGCCGGG 000160
000161 CCTTCCAACC CGGTGGGCCC GAGCTCCGAA AGGCCCCCTC GGCAGTGAGA GGGGCGGGAG CCCGCGGGGG CCGCGCCCTT 000240
000241 CTCTCGCTTC GGACTGCGCA ACGCTGCGCT CTGGGCTGAC AGGTGAGTGT TGCAGGCAGG CGGCCGGGTT TACGGAAGGG 000320
000321 GTGGGGGTTT GGGAACCGGT CTCCTGGGGG ATGCGGGGAT GAATCCCTGG GCCTGAAGTG TCTTAATTCA GGGGGAGGCC 000400
000401 GCATGCTGGT GTCAGGATGG CCTCCAGTTG AATCTGTGAC ATTTACCAGC TAGGTGATTT TGGGACTGGT GACTACGCGC 000480
000481 GAGACCTCTG GAGGTCGCCC TGGTAGACAC GGTTTTCAGA AGGACGGGTT TTAGGCATTC AGACCCTTGC GTGCATCCCA 000560
000561 GCTTGTTGCT TTCAGCCTCG CTAAGTGACT AAGCGACCTT CAGGAAGTAA CTTAATCGGT CTAAACCTCT TACCTGTAAT 000640
000641 AGGCGGATAA AACGGTCCCA TCAAGACTGA GAAAAAGCAC ACCAGCTATT GGCACAGCGT GGGCAGTGGG GCCTACAGGA 000720
000721 TGACTGACTT AGTCTACAGA GATCCCGGCG TACTTAAGCA GGTAGTAATG ATGGACAGGT GAGGCTTTAG GCGGCCGCCC 000800
000801 TGGGATCTGA ATTGCCCCTT GGCCCTTATC GAAGCTGCAG CTGCTTCCGC ATAGCTGCTG TGGTCAAAAA GGAGCCCAGA 000880
000881 GTGACAGTTT TCCTTGACGG TCGCCGTTCT GTTTGTTGTA ACTGATCTGC AACATTTTGG GAAAATACAG TTCCATTGTA 000960
000961 CCTGCCACCT TTCAGCTGTA GCCAGAGACC TTTATCAAAA TGGGCTTGTT TCCACAGAAC AGCAGAACGG TTGGGGGTTT 001040
001041 GCATGTACAG TTAACCAGCA TAAGACTCGT ACTGGGAAAA TCCAGCTGGG ATGTGACACA GCTTAACTGA TAGCTTAAGG 001120
001121 CATCAGTATT GGGACCAAAG GCTGGTCAGA TTTGTATCAT TCTGAGGACC AAATGATGGG AACAATAAAA TTGTTCATGA 001200
001201 CAGTTGTTCT CATTTTGCTG TCCAGATGAA GACTCTTAAG ATGACAGAAG GTGATTTTTC TGGTGATCGA GGACTTCCGG 001280
001281 GGTAATGACA GTGATGAAAT GCAGGGGACC TGGTTGCCCC CAAGTTTCCT GGCAGTGTGT GATACTGAGG AGGTGAGCTT 001360
001361 GTTTCTGGAG CTGTGCTTTA AGGTAAAGTT GATCAGCTTA ATCCTCCTGA TCCCTTTCCC ATCGGATCTG AACACTGGTC 001440
001441 TTGGTGGTCG TAAAAGGAGG AAAAGTAATA GTGAAGCTGG CCTAAATGTT GTAATCTGGT ATATGGCATG TGGGCTAGTT 001520
001521 TCAGACAGGT TTCAGAGATG GTTGGATCTC TGAAATTGTA AAATGAAGTA TAATCTTAGG CTAAGGGAAG GATGCGTGTG 001600
001601 AAGCTCTGGA GGTTGGTATA GTAATAGCTG ACCTATTACT GCATTTGGGA GGGATCTGTC ATAGCTTCCT TGCCTCTTAA 001680
001681 TTAAGGGTGG TGTTTTTTTC TTTTAGATTC ATGTTACATG TAAAGCTGTC CTCATTTGTG ACTATGGACC TATGGAGTTG 001760
001761 GGACAATCTC TATGGGAAGC AGAAGGCAAG GACCCCGGTC ATTTTAGGTA GAAACAACAG CATGCTAATG CAAAAAATTA 001840
001841 TGCAGTGTGC TACTGAACTT CAGAGGTGAT CAATAAAAGA AGAATAAAAA GACTAATAAA AGT
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Predicted Small Protein

Name ENST00000474814.1_smProtein_1298:1552
Length 85
Molecular weight 9518.1329
Aromaticity 0.107142857143
Instability index 57.6452380952
Isoelectric point 7.70172119141
Runs 13
Runs residual 0.0207764634516
Runs probability 0.0697416873887
Amino acid sequence MQGTWLPPSFLAVCDTEEVSLFLELCFKVKLISLILLIPFPSDLNTGLGGRKRRKSNSEA
GLNVVIWYMACGLVSDRFQRWLDL
Secondary structure LLLLLLLLLEEEELLLHHHHHHHHHHHHHLEEEEEEEELLLLLLLLLLLLLEELLLLLLL
LLEEEEEELLLLLHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii
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