ENST00000456120.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000456120.1 |
Source |
Gencode19 |
Same with |
lnc-FGFR2-4:2 |
Classification |
intergenic |
Length |
2014 nt |
Genomic location |
chr10-:122521324..122536396 |
Exon number |
2 |
Exons |
122521324..122523187,122536247..122536396 |
Genome context |
|
Sequence |
000001 AGGAAGTTAT TGTCCCAAAG TTGTGTGTCA TGCCCGAAGT GTCTGGGATC CCCGAGTGCC TGTGGTGCCC AAGAGCTATG 000080
000081 AATCTGCTAT CATCAACACA GAGGGTACCT TCTGAATGGG CTATGTCTAC AGTGATGCTG CAAATGGAAG CTAACCCTAG 000160 000161 GATGACTGGC CTCTGACACT TGAGCCATCC CATCATCTGT CATGGGTTGA CCCATCCATC CCCTCAATGA GCCTGACCTT 000240 000241 CAGGACCACT GACAGAGGAG CAGTCAATAG AAATTAATTG TTAAATACCC AGAAAATCTG AAATGGTATT TAATATGCAG 000320 000321 TTCATCAAGA GCAAAAGTTC CTTAAATCTT CATCTAGAAA AGTTATTTAT AAGGGATGAA TATGTTGTAT GAATATGTTG 000400 000401 TATGCAAATA TTATATTCAA GGGCAAGACC ATGAAAACAG TTTAAGAATC CGACAGGGAA TTAGATAAAG ACATCGGAGT 000480 000481 GCACTTGTCA AAATACAGCT ATCAAGAATG ATGATGTTGA AAAATAGTTT AGCAATATAA TTGTCTAGAA CCACAGGGAG 000560 000561 TCTGAGATTT TACCCAACTT GTGAGTTAAC AACTCTGCTA TAGCTTCATG AAAGAAGACA CAAGACTCCT GGGTCAGGAA 000640 000641 CAAAGGTCTC TAATACTCAC AGCAATATCA GGAGCCAGAA TTTCAGGATC CTTTTTCCTG CCAGTTTCTC AAGTCCTAAT 000720 000721 TACCACCGAG TTACAGGAAA GGGCCAGGTA ACACTAGCAC TGCCATCAGT GGCTGTATTA CAGAACAGGA ACTCCAAGCT 000800 000801 TAGGAAACCC AAATCTTTTA TAGTTAACAA TGAACACATC TGCCATTGTT CTGAAGGGAG ACGCTACCCC AATCTTCCAC 000880 000881 ACCTGTTCAC TATATAAATA TCTGTGAAAA GATAGACAGA AAAATAGGTG GAGAATGCCT CTGCTCACAA GATGTGCAGA 000960 000961 AACGTGAGAG GCTCATGGAG AACTGTTTCC CTACAATGAC AAAATGCTGA CGATATATTG TTATGTAAAA TAAAGCAGGC 001040 001041 ATTTTTCACC TCATTTTCAT GAAATATAGT GTGTTTATAT AGATATTTAG AAAAGTATGA AAGGACATTC ATCCAGATAT 001120 001121 CAATAGAAGA GTTTATTATT TTTGCTAGTT GTAAGTTCAA ACTTTTCTAG TAAAAATAGA TTACTTGTGA AATTATTTTT 001200 001201 AATCTTTTTT TTTTTTTGAG ATGGAGTCTT GCTCTGTCGC CCAGGCTCGA GTGCAGTGGC ATGATCTCAG CTCACTGCAA 001280 001281 CATCCACCTC CTGGGTTCAA GCAATTCTCC TGCCTCAGCC TCCTGAGTAG CTGGGATTAT AGGTGCATGC CACCATGCCC 001360 001361 AGCTAATTTT TGTATTTTTA GTAGAGACGG GATTTCACCA TGTTGGTCAG GCTGGTCTCG AACTCCTGAC CTCGTGATCT 001440 001441 GCCCACCTCG GCCTCCCAAA GTGCTAGAAT TACAGGTGTG AGCCACTGCA CCCCTCCTAA ATGTCAATTT AATAACTGAG 001520 001521 GGAGCCCTTA AAATACCCCG CTGACTTCCA CACGGGTGTG TAAAATAGAA TCTGCTCACG TCTTAGAGGA GATAAGTACA 001600 001601 TGCTTAATGT TCTTAGGAGA GACCTGCCTT TTGACATGGA AGCTGTGGTA TTGTTGACAA GAGCATACCT CCTTAAACCA 001680 001681 TGCAAACCAC GTTCACATCA AAGCTGCCTA CGAATGATTA TTTTCCATGA TGCTATGCTC CCTCCTGCCT GCCTCAGTGG 001760 001761 CAAGTGTGAC TCAGCAAGTG TATCCAGGGC ATCCCTCACT CTTACTTATT TTTGCCAAAT GCAGTGGAAA TGTATAGACT 001840 001841 TTTTTTCATA TTTATGTTGG CTGCAGAGCA TAAATCTGAA TAGGTTCTCC AAAGTAAGCT TTTTCTGCAT GCATTTGCTC 001920 001921 CCAATGATGA TAGGTATTAT GAATTGCTTT ATAGTAATCA TTATCCTTTT CCATATGTTT TACGGTTAGT CTGTGCTATA 002000 002001 AACTTGTTTG ATTT |
Predicted Small Protein
Name | ENST00000456120.1_smProtein_1220:1480 |
Length | 87 |
Molecular weight | 9720.1836 |
Aromaticity | 0.104651162791 |
Instability index | 69.3081395349 |
Isoelectric point | 7.57269287109 |
Runs | 14 |
Runs residual | 0.0231690385283 |
Runs probability | 0.0479092537916 |
Amino acid sequence | MESCSVAQARVQWHDLSSLQHPPPGFKQFSCLSLLSSWDYRCMPPCPANFCIFSRDGISP CWSGWSRTPDLVICPPRPPKVLELQV |
Secondary structure | LLLHHHHHHEEEELLLLLLLLLLLLLLEEEEEEELLLLLEELLLLLLLLEEEELLLLLLL LLLLLLLLLLEEEELLLLLLEEEEEL |
PRMN | - |
PiMo | - |