ENST00000455424.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000455424.1

Source

Gencode19

Same with

lnc-ALK-1:1,NONHSAT069885

Classification

intergenic

Length

3563 nt

Genomic location

chr2-:30355211..30366670

Exon number

3

Exons

30355211..30355509,30359118..30359216,30363506..30366670

Genome context

Sequence
000001 GCTAAATTGT GTTTCCCCCC ACCGAAATTC ATGCGTTGAA TCCTAATCCC CAGTACCTCA AAATGTGACT GTATTTGGAG 000080
000081 GTAGAAACTT TAAAAGGTGA TTAAGTTAAA ATGAGGTCAT TAGGGTGGGC CCTAATCCAA TCTGACTGGT GTCTTTATGA 000160
000161 GAAGAGGAGA TTAGGCCACA TGGAGAAACC AGGGATGCCT GCACACAGAG AAAAGACCTT TTGAGGATGT AGTGAGAAGA 000240
000241 TACCATCTGC AAGGCAAGGA AAAGGGCCTC AGAAGAAACC AAACTCACAA GAAAGCCAAC ACCTTGATCT TAGACTTCCA 000320
000321 GCCTCCAGAA TTGTGAGAAA ACACATTTCT GTTTAAGCCA CCCAATCTGT GGTGTTTTGT GGTGGCAGCC CTAGCAAACT 000400
000401 AATACAGGTA GCTACTGTGA ATGGGAACTT CCCGTATTAT ATATTACATC TCTAACCAGT TATTTGTTTT GTAGGAAATA 000480
000481 TGATGATTTT GTAGTTTATT TTCCTGGATT TTCTGGATGG AAAAATGTTT TTATCTGCAA ATGATCACAG TTTTGCTGCC 000560
000561 CACTTTCTAG TCATTTTGCC TTTTGTTTTT TTTTCTTTTC TTTTTTTTTT TTTTTTTTGA GACAAGAGTC TCGCTCTGTC 000640
000641 ACCCAGGCTG GAGTGCAGTG GTGTGATCTC GGCTCACTGC AACCTCCATC TCCTGGGTTC AAGCGATTCT TCTGCCTCAG 000720
000721 CCTCCTGAGT AGCTGGGACT ACAGGCACAT GCCACCATGC CCGGCTAATT TTTGTATTTT TAGTAGAGAT GGGGTTTCAC 000800
000801 CATGTTGGCC AGGATGGTCT CGATCTCCTG ACCTCGTGAT CCACATGCCT CGGCCTCACA AAGTGCTGGG ATTACAGGCA 000880
000881 TGAGCCACCA CTCCTGGCCT TTTATTTCTT TTTAAATCCT TGCTCATATA TCTTTGAGTA TATCTGTGAA TATTTCTATC 000960
000961 AGACAAATTC ATAAAAGTTA TTACTAGTTT GTAATGTTCC TTTTTCTAAA GAATGGGCAT GCAGTTTTAT TAAATATCTT 001040
001041 TTAGTGTCCA TTGAGATGAC CATTTTTTTC CCTTTATTCT GTTTTTTTAT ATGTATTACA TTAGCCCATC TCCAATATTA 001120
001121 AACTAGCTTT GTGTTTCTGG GATAAAAACT CCTTTGACAT TTGACGTGTG CTGACACTGA CATTCTTTGA GTAAATAAAA 001200
001201 TAAAAAACAG GAGTATACCA GTGTACACCA ACATACCCTG CTGCTTTATT CGGGTTACTG ACTATACTTT CTGTCTGAAA 001280
001281 TTGTCTGCTG TGTCCTCAGT AGATGACTCT ATTTAGTAAC TACAAACCCT GAGTCAGGCT TTCAGAATGC CCTTCTTTTT 001360
001361 ATTTATTAGT AGAGATGAGA TCTTGCTATG TTGCCAGCGC TGGTCTCGAA CTCCTGGGCT CAAGTAATCC TCTCTCCTCA 001440
001441 GCCTCCCAAA GTGCTGGGAT TACAGGCATG AGCCACTGTT CCTGGCCAGA GTGACCTTCT AATGGTGCTT CCATGGACCT 001520
001521 CTCCTTTGCT CCTATTTTCT TTCTCTTGCT TTTGGAGCTG CTCCTTTAGA GGTGAGACCA CCCTTCAAGT GGGTGAAATC 001600
001601 AGCTGTGAGT CTCTCATTGC TTCTGTGTAC TTCCCACAGC CTAGTAAATT TTCTCTTTGC TCCTCAAGCC CTGGAACATT 001680
001681 TGGGCCTCCA CCCACCTGTC TTACTCTCTG CGGAGAGTCT TGCTTCATAT TTAGAGTCAG ATTAAGACCA GTGGAAATGA 001760
001761 ACTGCCTTAC ATTTTCTCTG TTTCAGCATA TCTTCCTCTG TCACCTATTT TCTCCAGGTT TGGATAAAAG GTAGTCTCTC 001840
001841 CTGATAATTC TCAACACCTG ATGGACACCT ATTCCAGGAG AACACTCTGC ATCCTGAAGC TCATTCTGTC CTAAATGGAT 001920
001921 CCCATATCTC CTCTCAACGC AGAGACAAAA ACAAACATTC CTTAGGCCTA GGACCATCAC TTCCCTTGTG TCTGTTCATG 002000
002001 GACCACAATA CCTTGCCTGC TTCAATGGCT GCAAGTGTTT ATCATCTCTG TCTTGTCTGG GCCCTGCATA CAAGTGACCT 002080
002081 GCCCTCATAT CCAACACTCC AGTTTAGACT CCAGTAACCT CTTACTGGTG GGTTCTAATA ACCTTTTAAT AACTTCCCTC 002160
002161 TATCTTGCCC CTTGCTTTAT ATTGAGATCA TATTCATTGT TTCCCCTCCA TCTTGCTGCC TGGATCATGA ATGATGTCTA 002240
002241 TACCACAGGG ACCAGGATGC CATCTAGGGA CAATGGAGCA ATGAGCTGGG AGGAACCTGG ATCCTGAACA TTGTGTGGAG 002320
002321 TACAGCTGTC ATAAGGCTGA GGTTGCATTG TGTGTGTGTG TGTGTGTGTG TGAGTGAGTG TGTGTGTGTG TGTGTTGTTT 002400
002401 ACTTTAACCT GAGCTTATGA GAGCTCTGGG TAATGTAAAT AGAATAGCTC CTTTAGGAAG TGTCTTAGTC ATTTTGGGCT 002480
002481 GCTATAACAA AAATGCTGTA TACTGGTGGC TTAAATAACT ATTTATCATA ATTTTGGAGG CTGGGAAGTC CAAGATCCAG 002560
002561 ACACTGGCAG ATCTGGCATC AGGTGGGGGC CTGCTTCCTG GCTTATAGAC AGTTGCCTTC TTGCTGTATC TTCACATAGC 002640
002641 TGATGGAGAG ATCATTTTGC TCTTATGTCT TCTTATAAGG GCACTCATCC CATTTGTGAA GGCTCCACCC TCATGACCTG 002720
002721 ATTACCTCCC CAAAGCACTA CCTGCTAGTA CCATCACATT GGGGATTAGG CTTCAACCTA TACATTTTAT GAGGAAATGA 002800
002801 ACAATCAGTC CATATCAGGG AGAAATAAAT ATATGTAACT ATAATCACAA GTTAAGTAGT TAAAATAAAA AATATCAATA 002880
002881 TCTTATTCTG TGTGTGGCCC TGCCAATTTA CTAAAAGCTA TCATAAAGGA CACTGATCAT AAAACTTAGC CAATCATTTT 002960
002961 AGCCTGCACA AATTCTATAC GGTATTTGAA ATAATCAACC AAACAATAAT TCTTCAAACT TTGTTTCGTT TTGTTTTGTT 003040
003041 TTGAGACAGT TTCGCTCTGT CGCCCAGGCT GGAGTGCAGT GGCACAATCT CGGTTCACTG CAACCTCTGC CTCCCGGGTT 003120
003121 CAAGCAGTTC TCTTGCCTCA GCCTCCCAAG TAACTGGTAC TACAGTTTGT CCTCGGCTGT TACAGAGAAT TGATACAAAA 003200
003201 AATGATCATG TGAAGAATTT GCATCTTCTG CAGAACTACC GGTATCAGTC AGCAGTAGGA GATTGCCAGA CACGGTGGCT 003280
003281 CACGCCTATA ATCCTAGCAC TTTGGGAGGC TGAGGTGTGT GGATCACTTG AGCCCAGGAG TTCAAGACCA GCCTGAGCAA 003360
003361 CATGGTGAAA CCCCATCTCT GCAAAAAATA CAAAAATTAG CCAGGCGTGG TGGTGTGTAC CTGTGGTCCC AGCTGCTGGG 003440
003441 AAGGCTGAGG TGGGAGGAAC ATTTGAGCCC AGAAGTTGAG CCGTGATCAC GCCACTGCAC TCCAGCCTGG ATGACACAGC 003520
003521 AAGACCTTGT CTCAAAAAAT AAAATAAAAT AAATTTTAAA AAA
[back to top]

Predicted Small Protein

Name ENST00000455424.1_smProtein_1997:2116
Length 40
Molecular weight 4429.063
Aromaticity 0.102564102564
Instability index 54.8871794872
Isoelectric point 6.20294189453
Runs 5
Runs residual 0.0405354449472
Runs probability 0.047853736089
Amino acid sequence MDHNTLPASMAASVYHLCLVWALHTSDLPSYPTLQFRLQ
Secondary structure LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLEEEL
PRMN -
PiMo -