ENST00000455084.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000455084.1 |
Source |
Gencode19 |
Same with |
lnc-KDM5D-3:1,NONHSAT139635 |
Classification |
intergenic |
Length |
1628 nt |
Genomic location |
chrY-:22627554..22681114 |
Exon number |
6 |
Exons |
22627554..22627708,22628314..22628553,22630075..22630134,22631758..22631867,22669238..22669342,22680157..22681114 |
Genome context |
|
Sequence |
000001 AGGGCAGTGA ACCTAAGCCA GGAGCTGCTT AGGCATTAAG GCTTCTATAC CCAGAATCGT GTGCTAAGCT TTCTCTCCAA 000080
000081 GTCAGCACAA CAAAGCAAAC CAGAGCATCG TACCAACAAC CTGAAAGGTC ACCTGACTCC TTCCTTCTCA CTCCCATTCT 000160 000161 GTACTTCTGC ATACGTGGGC AGGCAAGTGA ATGGTAAGTA AGCCTGCAAA CAGCCTTTCT TTGTATAGGG AATGACAGGC 000240 000241 ATTTCATCAG CAACTCCAGG ATGGCAGGCC GTTATCCTGA AACCTATCAG AACAGCTCCT GCTTGGCTTC CAAAATATCA 000320 000321 CAATTTTGGA AATGTACAAA GGTTAGTTTT CACAGTCCTT GAAGCCTCTT TCCACCCTGG CCATAGCCCA TGTCAGCAGT 000400 000401 AACCTATGTC TTTGTTTTAC ATATCATGTT GTTTTACTCA CCTGGTGCCT CCAGTGCCCT ATAGGGTCCC TGAGCTGTCC 000480 000481 TGATACTCTT TCTTAGATCC TGTCAAAACA CTCACTTCAA CAAATTCTGC CCTTGGACTC TGATGGGAGG TTCTGATAAA 000560 000561 GAAAATTATT GAAAACCGCA TTATTTAAAT GTGGTTATAT TTCAGCTGGA CCTGGAAATA AAGACGAAAT ACTGCTTCGT 000640 000641 GACTGTGCTT TAAGGAATTT TTGCTTCTAG GAGATGATTG TGAGCCAGGC AGAGGTGAAG GAGCAGGAGC AAATAGCCAA 000720 000721 GGCACAGTTC ACAGTGCTGG ATTTTCTTGT GGATATAGCT GCATTGTTGT TCCTTCTGCC TTGTCCAACT GCTTCCTGGT 000800 000801 ATCCCTACCC TCACCTTTTC GTTATCTTTT CATCTCTCTA ATCATTGAGA AAAAGAGTAC AAAAAGCCAG ATTTTGCAGT 000880 000881 TCCCTATTTT GTATTCCAGG TTGAAGAGTG CTCTGGCTGT AGAGGGTCCC CACGATCTGT CATCTAGTAA CTCACCAGAT 000960 000961 ACATAAGATA TTTTGCCTGC TATGAAGCCA TTGGAGAATC AGGTCCAGCT GTGTCCTACA GATTTATACC CTCACTTTGG 001040 001041 ATGCACTGTG AATCTTGAAA CAATTCATTT TATACTTAAC CCTTTAAGTA TAAAGTATAT ACTTCAAGTA TAAAGTGTAA 001120 001121 GGTTGCTTCA TTTCATGGGC CCACCCAGGA TTTAAAGGTG TATTCCCTGA AAGAATTGGT TCCTTCCGGT GGGTTCCTGG 001200 001201 CTGACTTCAA GAATGAAGCT GCAGACACTT ATGGACTGGG AGGAGGCCCA CGAGAAAAAC AGGAAGAACA AGAGAAAGGC 001280 001281 TGAGGCTCTA GTGGCTGCTT TGCAGACTTG CAGAGTCCAG GATCCCCCAG GAACTTCCAC TGATTGCTAC CTGTTACCAG 001360 001361 TGTTAAAGCC AGGGCACTTT AAGAAGAATT GCCCAAGCCA CAAGAAAAAG CCACCTTGAC CACTTTTGTG GTGAAGACCA 001440 001441 CTGGAGATTG CACTACTGAC CACCAAGACA GAGACACAAT AGCGAATCTA GAAGTGGAAG TGTGAGAGAT ACCTGCAGCT 001520 001521 GTTAAGATGT CTGGGAATAG ACACACAAAC TCTCTCTCCC AGATAAGCAA CACAAAGCAG CACAGAGCAA CAGAGACTGA 001600 001601 AAGTCTGCCT ACCTGATCAG GGAATAAG |
Predicted Small Protein
Name | ENST00000455084.1_smProtein_260:361 |
Length | 34 |
Molecular weight | 3783.2732 |
Aromaticity | 0.151515151515 |
Instability index | 63.3090909091 |
Isoelectric point | 9.23797607422 |
Runs | 5 |
Runs residual | 0.0326086956522 |
Runs probability | 0.023635400106 |
Amino acid sequence | MAGRYPETYQNSSCLASKISQFWKCTKVSFHSP |
Secondary structure | LLLLLLLLLLLLHHHHHHHHHHHHLLEEEELLL |
PRMN | - |
PiMo | - |