ENST00000455084.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000455084.1

Source

Gencode19

Same with

lnc-KDM5D-3:1,NONHSAT139635

Classification

intergenic

Length

1628 nt

Genomic location

chrY-:22627554..22681114

Exon number

6

Exons

22627554..22627708,22628314..22628553,22630075..22630134,22631758..22631867,22669238..22669342,22680157..22681114

Genome context

Sequence
000001 AGGGCAGTGA ACCTAAGCCA GGAGCTGCTT AGGCATTAAG GCTTCTATAC CCAGAATCGT GTGCTAAGCT TTCTCTCCAA 000080
000081 GTCAGCACAA CAAAGCAAAC CAGAGCATCG TACCAACAAC CTGAAAGGTC ACCTGACTCC TTCCTTCTCA CTCCCATTCT 000160
000161 GTACTTCTGC ATACGTGGGC AGGCAAGTGA ATGGTAAGTA AGCCTGCAAA CAGCCTTTCT TTGTATAGGG AATGACAGGC 000240
000241 ATTTCATCAG CAACTCCAGG ATGGCAGGCC GTTATCCTGA AACCTATCAG AACAGCTCCT GCTTGGCTTC CAAAATATCA 000320
000321 CAATTTTGGA AATGTACAAA GGTTAGTTTT CACAGTCCTT GAAGCCTCTT TCCACCCTGG CCATAGCCCA TGTCAGCAGT 000400
000401 AACCTATGTC TTTGTTTTAC ATATCATGTT GTTTTACTCA CCTGGTGCCT CCAGTGCCCT ATAGGGTCCC TGAGCTGTCC 000480
000481 TGATACTCTT TCTTAGATCC TGTCAAAACA CTCACTTCAA CAAATTCTGC CCTTGGACTC TGATGGGAGG TTCTGATAAA 000560
000561 GAAAATTATT GAAAACCGCA TTATTTAAAT GTGGTTATAT TTCAGCTGGA CCTGGAAATA AAGACGAAAT ACTGCTTCGT 000640
000641 GACTGTGCTT TAAGGAATTT TTGCTTCTAG GAGATGATTG TGAGCCAGGC AGAGGTGAAG GAGCAGGAGC AAATAGCCAA 000720
000721 GGCACAGTTC ACAGTGCTGG ATTTTCTTGT GGATATAGCT GCATTGTTGT TCCTTCTGCC TTGTCCAACT GCTTCCTGGT 000800
000801 ATCCCTACCC TCACCTTTTC GTTATCTTTT CATCTCTCTA ATCATTGAGA AAAAGAGTAC AAAAAGCCAG ATTTTGCAGT 000880
000881 TCCCTATTTT GTATTCCAGG TTGAAGAGTG CTCTGGCTGT AGAGGGTCCC CACGATCTGT CATCTAGTAA CTCACCAGAT 000960
000961 ACATAAGATA TTTTGCCTGC TATGAAGCCA TTGGAGAATC AGGTCCAGCT GTGTCCTACA GATTTATACC CTCACTTTGG 001040
001041 ATGCACTGTG AATCTTGAAA CAATTCATTT TATACTTAAC CCTTTAAGTA TAAAGTATAT ACTTCAAGTA TAAAGTGTAA 001120
001121 GGTTGCTTCA TTTCATGGGC CCACCCAGGA TTTAAAGGTG TATTCCCTGA AAGAATTGGT TCCTTCCGGT GGGTTCCTGG 001200
001201 CTGACTTCAA GAATGAAGCT GCAGACACTT ATGGACTGGG AGGAGGCCCA CGAGAAAAAC AGGAAGAACA AGAGAAAGGC 001280
001281 TGAGGCTCTA GTGGCTGCTT TGCAGACTTG CAGAGTCCAG GATCCCCCAG GAACTTCCAC TGATTGCTAC CTGTTACCAG 001360
001361 TGTTAAAGCC AGGGCACTTT AAGAAGAATT GCCCAAGCCA CAAGAAAAAG CCACCTTGAC CACTTTTGTG GTGAAGACCA 001440
001441 CTGGAGATTG CACTACTGAC CACCAAGACA GAGACACAAT AGCGAATCTA GAAGTGGAAG TGTGAGAGAT ACCTGCAGCT 001520
001521 GTTAAGATGT CTGGGAATAG ACACACAAAC TCTCTCTCCC AGATAAGCAA CACAAAGCAG CACAGAGCAA CAGAGACTGA 001600
001601 AAGTCTGCCT ACCTGATCAG GGAATAAG
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Predicted Small Protein

Name ENST00000455084.1_smProtein_260:361
Length 34
Molecular weight 3783.2732
Aromaticity 0.151515151515
Instability index 63.3090909091
Isoelectric point 9.23797607422
Runs 5
Runs residual 0.0326086956522
Runs probability 0.023635400106
Amino acid sequence MAGRYPETYQNSSCLASKISQFWKCTKVSFHSP
Secondary structure LLLLLLLLLLLLHHHHHHHHHHHHLLEEEELLL
PRMN -
PiMo -