ENST00000455004.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000455004.1

Source

Gencode19

Same with

lnc-RP3-377D14.1.1-1:5,NONHSAT005747

Classification

intergenic

Length

1523 nt

Genomic location

chr1+:143699873..143713999

Exon number

6

Exons

143699873..143700051,143705011..143705246,143709266..143709317,143709989..143710303,143712474..143712581,143713367..143713999

Genome context

Sequence
000001 CATGGCAGTA TCTGCCACCA CTTGTTTTGG TCCAAGGGCA GAAATCAGTA TCCTGGAAAC CAATCAGTAC TTGCGCTCTG 000080
000081 AACTGGAAAA GTGCAAACAG AACTTCCAAG ACCTCACAGA GAAATTCCTG ACATCCAAAG CTACTGCCTA CTCCCTGACC 000160
000161 AATCACCTGC AGAAATATAG ATACATGATC CCTTAATTCA GGCTCAGGCT GAAGAACTGA CCCACTTACG ACAGAAGACA 000240
000241 CAGGAAGGGA GAGGTGTCTG CTACCTTTTT ACCCAGCATG TGAAGAACAC AGTCAAGTCT TTTGAGGGCC TTCTCAGGAA 000320
000321 CACTGACATT GCCTACTACC AGAGACAGAG ATTCTGTGAG CAAATGGTAC AAGGAAGCCA GCTGACAGAG ATCCTTGTCA 000400
000401 GAAAACTTGC CACAGAAAAT CACAACGGTA AGAAAAATGA AGACAGGCAA AAGCCACTGG CTCCTAGGCA CACTCTACTC 000480
000481 CCGGTCAAAA GTGGATTGTA TATGTCCTCT TTGATGTGAT GGTCCCTTTG GTTTTGGTGC CTCTTCCATG AGCTTCAGAT 000560
000561 CAGAACTAGC TATGTGGTTC CAGGCTGCCT TGGTTTCATC CCTTGTCTTG CCTACTTCAC CTGGCTCAGG AGGGACATCA 000640
000641 AGGAGGAAGA AATGGATAAA GTCCTGGAGG GACTTCAAAC AGTATTTGAC CCATTCCAGC CGCCATGACT CCCACCAGCT 000720
000721 TCGCAGCAGC AATGCCTTCC TCTTTGATGC ACAGGAAGAC CCCTCTGCTC TGGATATAGC CAAAGATGAG ATCCAGAGAC 000800
000801 AGCGGTAGCA CCTGAAGGAA ACCCTTTTCA TCAACAACTG CCTGTGAGAA AAGCTGGAAT GTCATCTCAG CAGCTTTGAT 000880
000881 GAAGAAAATG CATGCACCTC TAAACTCTAC AGGCACATCA TAGATTCCAT CGTCCAGCTG TATAATGAAA ACAGAGTTCT 000960
000961 CAGAGAACAC CGGAGACTCC CCCGACTTGC CTGTATCAAG TTTCTAGAGG TAAGCGGTGA AAATCCACAA TATGAAGTCA 001040
001041 CTCTCAGACG GGTCCCTTCT CTTGTCACAC TCCACTGTAG AAACAAAAGA GGACGGGGAA GCCAGAGCTG CTCAAAACCT 001120
001121 TATAACCCAC AATTGTCATA GTTATTCTCA ACTTACACAG GGCTGCTTTC TAGACGCACC CCCTCCAGGC CCCCAGACTG 001200
001201 CCAGGCTCCA GGAATAAGTA GCTCTGAGAA ATATAGTTTT TCGGTGGAAG CCACACTCCA CTATTGCAAA TTGGAGAAGA 001280
001281 GAAGGACAAA CTTAAAAGGT GAAAAGATTT AAGAGAACAA CATGGTGAAA CCCCATCTCT ACTAAAAATA CAAAAATTAG 001360
001361 CTAGGCGTGG TGACATGCAC CTGTAGTCCC AGCTACTCAG GAGGCTGAGG CAGGAGAATC ATTTCAACCT GGGAGGCGGA 001440
001441 GGTTGCAGTG ACCCAAGATT GCTCCACTGC ACTCTAGCCT GGGTGACAGA GCAAGACTCC CTCTCAAGAA AAAAAGAAGA 001520
001521 AAG
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Predicted Small Protein

Name ENST00000455004.1_smProtein_1031:1216
Length 62
Molecular weight 6581.2129
Aromaticity 0.0327868852459
Instability index 43.5639344262
Isoelectric point 5.42449951172
Runs 9
Runs residual 0.00527605049934
Runs probability 0.0453394571042
Amino acid sequence MKSLSDGSLLLSHSTVETKEDGEARAAQNLITHNCHSYSQLTQGCFLDAPPPGPQTARLQ
E
Secondary structure LLLLLLLEEEELLLEEEELLLHHHHHHHHHHHHLLLLLLLLLLLEEELLLLLLLLLLLLL
L
PRMN -
PiMo -