ENST00000455004.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000455004.1 |
Source |
Gencode19 |
Same with |
lnc-RP3-377D14.1.1-1:5,NONHSAT005747 |
Classification |
intergenic |
Length |
1523 nt |
Genomic location |
chr1+:143699873..143713999 |
Exon number |
6 |
Exons |
143699873..143700051,143705011..143705246,143709266..143709317,143709989..143710303,143712474..143712581,143713367..143713999 |
Genome context |
|
Sequence |
000001 CATGGCAGTA TCTGCCACCA CTTGTTTTGG TCCAAGGGCA GAAATCAGTA TCCTGGAAAC CAATCAGTAC TTGCGCTCTG 000080
000081 AACTGGAAAA GTGCAAACAG AACTTCCAAG ACCTCACAGA GAAATTCCTG ACATCCAAAG CTACTGCCTA CTCCCTGACC 000160 000161 AATCACCTGC AGAAATATAG ATACATGATC CCTTAATTCA GGCTCAGGCT GAAGAACTGA CCCACTTACG ACAGAAGACA 000240 000241 CAGGAAGGGA GAGGTGTCTG CTACCTTTTT ACCCAGCATG TGAAGAACAC AGTCAAGTCT TTTGAGGGCC TTCTCAGGAA 000320 000321 CACTGACATT GCCTACTACC AGAGACAGAG ATTCTGTGAG CAAATGGTAC AAGGAAGCCA GCTGACAGAG ATCCTTGTCA 000400 000401 GAAAACTTGC CACAGAAAAT CACAACGGTA AGAAAAATGA AGACAGGCAA AAGCCACTGG CTCCTAGGCA CACTCTACTC 000480 000481 CCGGTCAAAA GTGGATTGTA TATGTCCTCT TTGATGTGAT GGTCCCTTTG GTTTTGGTGC CTCTTCCATG AGCTTCAGAT 000560 000561 CAGAACTAGC TATGTGGTTC CAGGCTGCCT TGGTTTCATC CCTTGTCTTG CCTACTTCAC CTGGCTCAGG AGGGACATCA 000640 000641 AGGAGGAAGA AATGGATAAA GTCCTGGAGG GACTTCAAAC AGTATTTGAC CCATTCCAGC CGCCATGACT CCCACCAGCT 000720 000721 TCGCAGCAGC AATGCCTTCC TCTTTGATGC ACAGGAAGAC CCCTCTGCTC TGGATATAGC CAAAGATGAG ATCCAGAGAC 000800 000801 AGCGGTAGCA CCTGAAGGAA ACCCTTTTCA TCAACAACTG CCTGTGAGAA AAGCTGGAAT GTCATCTCAG CAGCTTTGAT 000880 000881 GAAGAAAATG CATGCACCTC TAAACTCTAC AGGCACATCA TAGATTCCAT CGTCCAGCTG TATAATGAAA ACAGAGTTCT 000960 000961 CAGAGAACAC CGGAGACTCC CCCGACTTGC CTGTATCAAG TTTCTAGAGG TAAGCGGTGA AAATCCACAA TATGAAGTCA 001040 001041 CTCTCAGACG GGTCCCTTCT CTTGTCACAC TCCACTGTAG AAACAAAAGA GGACGGGGAA GCCAGAGCTG CTCAAAACCT 001120 001121 TATAACCCAC AATTGTCATA GTTATTCTCA ACTTACACAG GGCTGCTTTC TAGACGCACC CCCTCCAGGC CCCCAGACTG 001200 001201 CCAGGCTCCA GGAATAAGTA GCTCTGAGAA ATATAGTTTT TCGGTGGAAG CCACACTCCA CTATTGCAAA TTGGAGAAGA 001280 001281 GAAGGACAAA CTTAAAAGGT GAAAAGATTT AAGAGAACAA CATGGTGAAA CCCCATCTCT ACTAAAAATA CAAAAATTAG 001360 001361 CTAGGCGTGG TGACATGCAC CTGTAGTCCC AGCTACTCAG GAGGCTGAGG CAGGAGAATC ATTTCAACCT GGGAGGCGGA 001440 001441 GGTTGCAGTG ACCCAAGATT GCTCCACTGC ACTCTAGCCT GGGTGACAGA GCAAGACTCC CTCTCAAGAA AAAAAGAAGA 001520 001521 AAG |
Predicted Small Protein
Name | ENST00000455004.1_smProtein_1031:1216 |
Length | 62 |
Molecular weight | 6581.2129 |
Aromaticity | 0.0327868852459 |
Instability index | 43.5639344262 |
Isoelectric point | 5.42449951172 |
Runs | 9 |
Runs residual | 0.00527605049934 |
Runs probability | 0.0453394571042 |
Amino acid sequence | MKSLSDGSLLLSHSTVETKEDGEARAAQNLITHNCHSYSQLTQGCFLDAPPPGPQTARLQ E |
Secondary structure | LLLLLLLEEEELLLEEEELLLHHHHHHHHHHHHLLLLLLLLLLLEEELLLLLLLLLLLLL L |
PRMN | - |
PiMo | - |