ENST00000454626.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000454626.1 |
Source |
Gencode19 |
Same with |
lnc-ZHX3-1:1 |
Classification |
antisense |
Length |
1462 nt |
Genomic location |
chr20-:39726969..39766643 |
Exon number |
7 |
Exons |
39726969..39727464,39729298..39729432,39729812..39729929,39762127..39762285,39763779..39763932,39764342..39764451,39766354..39766643 |
Genome context |
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Sequence |
000001 AGCGGGGGCG GGGCCCGGAG GGAGTCTGGG AGGGCCCGAA AGTTTGCCCA AGTCGCTGGG GCGGCCGGCC GGGGTGCAAG 000080
000081 CAGTCGGGCC GGGCTCCCAC GACCCCCGCG CGGGGCGGGC CCAGGCAGGA AGTGGGCGCA CTTACTGGCC CCCTCGATCT 000160 000161 TGTCGGCGCC CCGGCTCCAC GTGATCTGGC GCGTCTCCAG CTTGACCTGG AAGGTCTTCC GCTCGGGTCG CTGCGACTTC 000240 000241 TTGGAGTAGA ACAAAGTCAT GACGGTGCCC ACCTCGAGGC TGCGGCAGAG CACCGCCAAA ATTGAGGACA CCCACGGTCG 000320 000321 CGGTGGAGCC TGTCTGACAT GTTGAGCCAG GCAGTGGGTC GGCTGCCAGG CACAGCAGGA CAACTTACTG CATTTCAGAG 000400 000401 GAATGATGGT CCACAATTTA CTGATGAGGA AACAGAGATT CAGAGAAGTT CTACAATTTG CCCCAAAGCC ACATAACATG 000480 000481 ACTAGGTGGG AACTAGAACC CAAGTCGGCC TGACTCCATG AGTTTTCTGC CTCACAGGAG ATCCACTGGC TTAGAGTTTC 000560 000561 TCTCTCGTCG CCCAGGCTGG CGTGCAATGG CACAATCTTG GCTCACTGCA ATCTCCGCCT CCCGAGTTCA AGCAGTCCTG 000640 000641 CCTCAGCCTC CTGAGTCTCT TTTGATTTGG TGCTGTCACA GGTTGGGTTC TTTGGATGTG GACTCTGTGA CAGGAAACCA 000720 000721 GCCAAGTAAC CTTGTTATCA TGCCGGACTT CTTTCCACTT ATGTCCTGGA GGAGGAGAAG GAACCTTGGC ATCTCTGGAA 000800 000801 ATAACAGAGC ACGAGGATAG TGAAATAAGA TGCCCCAAAG TGTGAAAGTG GTGATGTTGG CAATTTGGAT ATGCCATACA 000880 000881 GAAGCTGCAC AGAGTGCTTT AAATGAAAAG GTGGAAATTA TCGACTTAAT AAAAAAAACT GTATGGTGAA GTTGCTAAGA 000960 000961 TCTAAGGCAG CCTGTAGAAG AAAAATGACA TCCCAGCTGG ATACCAGAAA GATCCTTCAG TAATGAGGAT GGCCAAGGCT 001040 001041 GGAAGATGGA GATGGATGAG CATCACAAGA TTCCAGAGTA AAATAGATCA AAGAGCAGGG AGGTACATGG CCAATATGAT 001120 001121 TTCATCTGTC TTAAATCCTT AATATCCAGT AGCCACTGTG GGACAGGTCT GCCCATCCTT AATTACTATA TTATTGGCTG 001200 001201 GAGTTACTGA CTGGTTTTTA GGTCACTGAA GCACCAAGAT TCCTGTACAG AGCTACTGAG CAAAGTACTT GTTCACAATT 001280 001281 TTCAGTCTAA CTAAAACCTT TAAGAAAATT TAGACTTTGA GAACTCTAAG TCTTTAGCAT AGAATGATGT GAAATTACTG 001360 001361 ATGTTAATGT TGTGTCATAA GAACCAAGAA GAAAGTTAAA TGAACCAATC ACAATTCCAG AATTCTCCAG AGGTTTAATA 001440 001441 AATTCTGTAG TACCAGTTTC TC |
Predicted Small Protein
Name | ENST00000454626.1_smProtein_338:475 |
Length | 46 |
Molecular weight | 4852.3333 |
Aromaticity | 0.0444444444444 |
Instability index | 54.04 |
Isoelectric point | 4.93572998047 |
Runs | 9 |
Runs residual | 0.0377525252525 |
Runs probability | 0.0483228326366 |
Amino acid sequence | MLSQAVGRLPGTAGQLTAFQRNDGPQFTDEETEIQRSSTICPKAT |
Secondary structure | LHHHHLLLLLLLHHHLLLLLLLLLLLLLLLLLEEEEELLELLLLL |
PRMN | - |
PiMo | - |