ENST00000453529.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000453529.2 |
Source |
Gencode19 |
Same with |
lnc-DENND1A-3:1 |
Classification |
intergenic |
Length |
2146 nt |
Genomic location |
chr9-:126768556..126771675 |
Exon number |
2 |
Exons |
126768556..126770370,126771345..126771675 |
Genome context |
|
Sequence |
000001 ATACATATAG GCACGCGATT CCGTCGCCAC CTCTCGGACC AGCAGCCCAC GTCCAACGCT GGGCCGACCC CAGATACACA 000080
000081 GGCAGTCGGG ATTCCCGCCC GGTGCGCTTG TCTATTCATC CCTCTGCGTC AGGCTGGGAC GCGCTCCGTC TGTAAAAGGC 000160 000161 TCAAACGCAT CTCCCGCCGC GGGGCGGGAT CTAGGGGCCC AGGCCCCGGG GTCCAGAGGC GGGTAACTTT GCTAATCTCC 000240 000241 CCCAGCGGCG GGGAACGTCG CGCAACCGCT GAGCCCTGTC CGCCGAGACT AAACAAGCAG AGGAACAGGC TGTAAACACA 000320 000321 CATCCTGACA CGCAGGGATG TTGCTCTTGG AGAATGTGAA GACAGTTTGC TTCTTGACAA GCGAGCGAAC GGGCGCCCAG 000400 000401 ATTTTTGCAG CCTTTCCGAG TCTCCCCCGA GGGAGAGGCG GCAGAGAAAA CGCCGGATTT GGGAGCCACC AGGGAAGGAT 000480 000481 CCGCGCAGGG GAGCCGCCCT CCTTGGCCCC AGACCCGCCT GCCTGGGGCC CCCTTTGCTC ACTGTCAATG TATGGTCTGA 000560 000561 AGCTCTGAGG ATGGTGCTGG GGACTGGGGT CGGGGGAAGC CTCTTGAATA ATAACTGCAA AGAAGAAAGA GGCGAGAACG 000640 000641 TCTCCCTAAC CTTGAAGCAG AAAGGACTGT GTTCTTAAAG CTGTTGGCTG CAGTCACAGG GCCAGTTGCC CGCCTCTGTT 000720 000721 CCCTGAGTAA AGTGTAACAT CTTCTGTCCT CCTGGCTTGC TTGCACCATT CAGCAAATTA TACTCCTTCC TTACCAAAGT 000800 000801 GGGAATGCTC AGGGAAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTCCCC TCTGCACTGA GGCTGCTGTT AGAGATGTTA 000880 000881 CCAATTTAAA CCTTCCAGAA TCCTGGAGGT TTACATTTTG TAAAGGGAGG GGACACTCCT GGACTGTCAC AATCCCAATT 000960 000961 CTGGTTAGAG TGGCAGGGAC TGAACAAAGC CACCAACATG CAAAAGTCCA TCTCCAGAGT AGCATGCATG CCCCCAGGAA 001040 001041 ACCCCCAGTG GGATATGCTT CCTGCACTTT CCCCTTCTCT CTAACCTCTG TCTCCTGTTT GTAAGGCAGA GGAAGGGTGA 001120 001121 TTCCTTGCCA CTGCACAGGA ATGCAGGGTT AGGGTTATCT CCAAGAAAGG GTGGGGTGAG GCTGAGTCAC AGGGAGAGCA 001200 001201 GAAAAGCTCT GTATCTTCAA TGAGGACCCA CACACACACA CCTTTCCCAG GCTTGTGGGC CTCATTCAGC AAAGCAGGGA 001280 001281 GTGTTTTATA TTGATGCGAG AGGCTGTCAG TCAGCAGTAA ATCAGTTCAG GCATAGCTAT CTCTTTCTTT ACGAAATCAG 001360 001361 CTCATTGCCT TGGTCACACT ACACAGAAAA TCTGCTTATC ACCGCTATCG ACAATAAAAA TTAGTGGAGC CTTAGTTGTT 001440 001441 TCCGAAGAGG AACCCCGTGT CTGTGACATT AGAATAGATA AGTGGCTTGG CCTGTTGCAG GCAGAGAGAA GCCCAATTCC 001520 001521 TCCTCCTCTT CTCCCTGCAG CGATCTGAAC AATTCTGAAA CCGCCTCCCT GGGCGTCAGC TGAGCAGGTT GGGGAACTAA 001600 001601 CCAGGGCTCT CTCTCTAGGG CCCTGTTAAA TGCACTGAAC TTAAAATGAA ACACGAAGTG TGAATTTCAG GTTTGAACAT 001680 001681 GATGCATCAG GAAACGTGGA GGTTGGCAGC CCTTTTCCTC CCTCCTGCTT TTCAGTAGCA GGTATTAATA TTGTATTAAA 001760 001761 TGTTATGAGA AAGTAAAGGC TGCGGAGAGG AATGTGCTCA GATGCAATTT TGTCAAGGTT TTTATCTGTG ATTATGATTC 001840 001841 CAGATGTAGA AACTCCCGGA GGAGGGAAAT GAGGGGCTGC TGGCATGTGA CATGTGTTTT AAGGTGTTTG GCAGTGTTTC 001920 001921 TCAAAGTGGT GACAAAATGT TCAATTTTAT TACAGGGAAT TGGTAAAAGA AATATGAATA CTAGGTCAGA GATTGTTCAC 002000 002001 CTCAGCAAAA GGATTTACCA TTATTGATTA GGGTGCAGAA AGTATGTATC TAGGTCCTGC TTAAATCACA TTGTCAACAA 002080 002081 TATAAATCTG TCAGATCAGA TTTTTCTGAA AGAACAATTA TAACAAAATA CACTATAGCT AATTGC |
Predicted Small Protein
Name | ENST00000453529.2_smProtein_1868:2026 |
Length | 53 |
Molecular weight | 6076.3304 |
Aromaticity | 0.0769230769231 |
Instability index | 60.2942307692 |
Isoelectric point | 10.0736694336 |
Runs | 8 |
Runs residual | 0.00347674923946 |
Runs probability | 0.0389617558736 |
Amino acid sequence | MRGCWHVTCVLRCLAVFLKVVTKCSILLQGIGKRNMNTRSEIVHLSKRIYHY |
Secondary structure | LLLEEEEEHHHHHHHHHHHHHHHHHHHHLLLLEELLLLLLEEEEEEEEEEEL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii |