ENST00000449270.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000449270.1

Source

Gencode19

Same with

lnc-ANKRD5-1:1,NONHSAT078568

Classification

intergenic

Length

1036 nt

Genomic location

chr20+:9966736..9987764

Exon number

2

Exons

9966736..9967167,9987161..9987764

Genome context

Sequence
000001 GGGACTTTTG AAATGCATTC TGTGAATGAG AAGAAATGCA AACATGTTGG CAAAACTGAT TATTTTCATT GTGGATCTCA 000080
000081 CGCTTGCTTT GGCCATTTTT GTTATCTTTT ATTTAATGGC TGCCACTGTT TTTTTCATCT CGGTCATTTT CTATATTTTC 000160
000161 AAAAGGGAGA TGGAAAAAAA ACTTTGACTT CAACAAGCGC CGAATCTGGG CGCTGGATTC TAGCAATGCT ACTGAGGAGC 000240
000241 CTTTGGCAGG TGGCGCAGAG AAAGTCAGCT CCAAGCTGCT TCCTGTCCAT TGTCCAGCTG TAGGAGAAGG GTCTTTCCTG 000320
000321 CCCAAGGACA GTGGTCCTCT CTTCTAAAGA GCAAGGAGCT CTCTGAGGTG GAGGAGGCTT GTGAAGACTT CCCAGAACAC 000400
000401 TGCACCCACC TGACCAAGAG GTACTTTTTA AGGTCATTCA AACTGTCATC TACACATGAA TAACAATGAA ATTCTCATAA 000480
000481 AGAAGCAGAA ATACCCAGGA GGCATGAAGA GTCATCATGC TTCAAAAGTA CATGTATTAG GACTTCACGA CCTCAGGAAA 000560
000561 AGTAGACTCC GTAACTCTTA AAAGCTCAAT CTTGGAGAGG AGAAACATGC TGTTTGATGA CATAGCACAG AAACTTGTTG 000640
000641 AAATATCCTT GGAGCTTGAG ATGTCGAGAG CGAGCCATCA AAATGTTCTC AAGAATTAAA TTGAAAAATG TTGCTTCAAA 000720
000721 ATGTCTTAGC CAACCAAATA CAAACATTTT TGTCATTGTG ACAAAAAAAA AGCTCACCAA TTGTCTTTGC TAGTCTCAGC 000800
000801 ACAGCCCAAG AGGAGCATCC TTCATGAGCC AACTGAAAAA CAGTGTGTAG TCTATGCTTC TGACCAGATG GGCTTCTCTT 000880
000881 GTCACCATAA CATTATGTAT TAGGACTTCA TGTATTATGT ATTATGTCAA CACTTTATTC ATTATGCTGA TCATACTCTG 000960
000961 TATTTCACTT GCTCTGGTTA TTTGTAAAGC TTTTCCTATT TCATCATTAA ATTATCCTTG TATTTTAGCA ACTGCA
[back to top]

Predicted Small Protein

Name ENST00000449270.1_smProtein_455:580
Length 42
Molecular weight 4736.491
Aromaticity 0.0243902439024
Instability index 43.8975609756
Isoelectric point 10.7084350586
Runs 7
Runs residual 0.00523716893611
Runs probability 0.0438337497161
Amino acid sequence MNNNEILIKKQKYPGGMKSHHASKVHVLGLHDLRKSRLRNS
Secondary structure LLLHHHHHHHHLLLLLLLLLLLLLEEEELLLLLHHHHLLLL
PRMN -
PiMo -