ENST00000448407.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000448407.1 |
Source |
Gencode19 |
Same with |
lnc-EFNB2-4:1 |
Classification |
intergenic |
Length |
2482 nt |
Genomic location |
chr13-:106111404..106158030 |
Exon number |
7 |
Exons |
106111404..106112937,106114648..106114856,106118536..106118769,106142125..106142366,106143456..106143500,106144409..106144526,106157931..106158030 |
Genome context |
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Sequence |
000001 TCAACCACTC ATAGACTGCT TTTGTTCAAA CTGCGTTCAA ATAAGGCAAA CGCCGAGCTG GAACCAATCT CACTGTTTCT 000080
000081 GTACCTCGCT TCTAATTCCT TTTCAGAAAA CAAAAACTCC TAAGAGAATG AATAGAAATT TTCTTAAGGA ATTATAAAGA 000160 000161 ACCATCTCAG AATTTTACTC TGTTACTGCA AAATCTCATG CAAAGATAAC CAAGTACGAA GAATTAACTG AAATTCATCC 000240 000241 CAAGATGAGG CATCTTGGCT GAGTTGCAGG TCCACATTCG TTCTAGAGGC TGCCTGCGGT CCTTAGAGGC CTCATAGGCA 000320 000321 AGGAACTCAT AGTTTCTTGC CATGAAGACT TTTCCAACAT GGCTGCTTAC TTCTTCAAGC CTGTAAGGAG ATCCGGTCTC 000400 000401 AGTTGGCCAG GTCTTGTGAA AGGTAACCTC ATCACCGGAG TCAAGTGTCA TCACCTTTCC CATGTTCCAT TGGTTAGAAG 000480 000481 TCCCAGCTCC TGCCCACATT CAAGGGAACA TTCACCCTGG GAGCTCTGTG CTGCCATGCA AATGTCACAT TGCACTGAGG 000560 000561 CCGCCATGCT GTAAAAAACC CCAAGCTACC TACCTGAAAA GCTGGAGAGA ATCAGCACCC ATCAGCTTTT CCAGCATTTT 000640 000641 GGGTCCTCCC AGCTAAATCA TCGGCATTGT GAAGCAGAGA TGAGACCTCC TGCCATGCCC TTTCCAAATC CTGGACCAAC 000720 000721 AGAATCATCA TATACACTAG GTTTTGTGCA TCTCTAAGAT GATCATCTTG GTGTGGGGTC CTGATCTTCC CAGTGACTTA 000800 000801 GCAGCACAGT AATTTGGCTG AAATGTTGAT GAGTTCAGAC AAGAAGAAGG TGATGATGAC AAGAGAGCGT CACGGGGAAA 000880 000881 TTCTGCCCTG AGGAAGGAAT AGTTTGAGGC TGGAGAGATG TGCTACCCCC GCCACTCTTT CTCAAATGGA AAGACAACCT 000960 000961 GTAGGCACAG AAATCATTGC TCTGCTTACA CTGAAATCTC CTGCTGACTT TGAGAGCTGA GCATTGGATT TTGATGGGAG 001040 001041 AGTGAAACTT AGTGAAGAAA TGATTTGAAC CTTTGTTGAT CTAATACTTC TGTGATACAG TTATCTAAAC AGAATGAGTC 001120 001121 TAAAGTCAGT ATAAAGACCT GTGTCTCTCC ATGTTTTGCT GCTTATAATT GCAGAGGAAC ATTTTGAGAT AGAAAATTTT 001200 001201 ATCCCTCTTT CAAGTGACTT TTTATAAAAC ATAACCTTTT AAGAGAGGTC ATTCTTTTGA AAAATTGTCT GAATACAAAA 001280 001281 AAGTAACTGA ACAGCAAGGG ATTGTAGCCA TAATGTTCTT GACCACTTTA GATTGACAAA TAGTATCTCA AAATTGATCA 001360 001361 GGTTCTGGAG AATCTATTGA GGTTGTATGG AGTAACCAAG TGATGGAAGA GGTTGGAAGT GAATAATTTT ATGTGGTATT 001440 001441 ATGTGATTTT TTTTGGTGGG GGTAGTGTCT GGAGCTGAGC ATGATGGAGC CTAGATGGGG CAGCCTTCTA ATGCTCCCAG 001520 001521 TATTTCGCAA ATCATATGTC ACGTCAAAAT TGTAATGACA AAGCTCACAG CAGCTGCCTA CGCCAGGTTT GGTGCCAGCT 001600 001601 CTAATTAGAG CATTGATCAT TTCTCTCCCC TTCATGAATG CACATGAGTG CACATTTTCA TATATAAGGG CAAAGGACAT 001680 001681 TTCAAAGTTT GGATGGAATC TTTCCTACTT AGAAGTAATA AAAAACAATA CTTTGAAATC TTACCAAATG TTAAACAAAT 001760 001761 AGCAACAATT TTTCCATTTG AAGATGTGTG TCTTAAGGTC TGTTGGATCT TTCAAATTTC TATTTTGGAC ATGGAAACTA 001840 001841 CAGATGAAAT TTAACTTACT CAAAGTTACA CAGAACTCCT GGCTGATCTC TTTTACTTAA TTCTTCTAAA ATCTAAAGTA 001920 001921 AGAATAATTT TGAAATTTTA TTGGTAATGC TTAAATAACA AAAGTTACTT TAATATGTTA CATGTTTGAA GTTTCATTTA 002000 002001 TACTTAATAT CTAATTTAAC GCTTGTGAAA ATATTATTCA GTATTTTTTT TTCTTTTCTA AAATGACTTG TTCAGGGCTC 002080 002081 CTTTTGGGAT TTTAAGTGAG AAAAACTCTA TTTCATAATA TTGTTACCAT GCTCATCCAA TAACACTTCA TAGATGGTTA 002160 002161 GCCATCTCTA AAATTAAATT TTGTAGTTGA GGAGCATTGA AAATATCACC TATATTTGGA TTTCTGTTTA ACACTTCAAA 002240 002241 ATGCATTTTA TCATAATTTA AAATTTGATT TAAATACAAA CCTCTTTATA GAAAACCTGA TAAATGTAGT TTTATTTGTT 002320 002321 TGCTTGCTTT TTTTTGCAGG GAGGGATATT CCCTTGATAC CACTCTGTCT TTATGACTCA TCGGTTATTT ATAAATGTTA 002400 002401 TCATCGTTTT TCTGATTTTT AAATAAGTTT CAGAATTAAT ACATTTAACT GAATAAATCA ACCAATAATG TCAAACTTAA 002480 002481 AA |
Predicted Small Protein
Name | ENST00000448407.1_smProtein_461:655 |
Length | 65 |
Molecular weight | 7019.186 |
Aromaticity | 0.078125 |
Instability index | 79.1265625 |
Isoelectric point | 9.16314697266 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0471383147855 |
Amino acid sequence | MFHWLEVPAPAHIQGNIHPGSSVLPCKCHIALRPPCCKKPQATYLKSWRESAPISFSSIL GPPS |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLEEHHHHHHLLLLLHHHHL LLLL |
PRMN | - |
PiMo | - |