ENST00000447529.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000447529.1

Source

Gencode19

Same with

lnc-CHRM2-1:1

Classification

intronic(AS)

Length

1835 nt

Genomic location

chr7+:137003339..137011700

Exon number

2

Exons

137003339..137003604,137010132..137011700

Genome context

Sequence
000001 GTGTATGCTG CGAATTAATA CGTGAATGAA CAAATGACTA CAGGCATTAT CCGAATGATA TGATCTTCCT TCCCCATCTT 000080
000081 TCTGGGTGTC GGCCTTCATT CACCATGAAG TTGTAAACAC AACATTGATT TTGGAGTCAG ACAACCTAAG TTCAAATCTA 000160
000161 GCCTTTGCTA ATTACTGGCT GAAATCATTG AGAAATCTAC TTAACCTGCC TGAGACCTCA GTTTCCTTAT TTGTAAATGG 000240
000241 AATAGTAGTG CCTCAAGTGA GATAAGGAAG AAGGATGCCT GGAGTGGGAT AAAGAAAATA TAGAAAAGGA AGGGAGTGTC 000320
000321 TTCACATCCC AGCAGGGCAC ATGGAGGAGG AGGAGGAGGT GCTGACTATG GACAGCAAGA AGCAACATCA CCATCACAAA 000400
000401 ACACCCACCC AGGGCAGGGG CCCTTTCAAC AAGGAGCATA AGAGACTGTT TCTGCCTCTG ATGGAAGCCC AGCATTTTGT 000480
000481 TTTTCTCCAC ATATTTTAAT CAATATTTAC CAAGCCATAA CAATCTGGCT TTCACTGTCA CCCTAGGGTT GAGTTTCATG 000560
000561 AGTAACTACC TTTTCCACTG GCTGCAGAAA TAATGACTCC ATGTATGATT GGCAGAAGGT CATTCATTTG AGCATAGGAA 000640
000641 AACAAGCAGT TTCAAGAAAA GAGCTGGCAT CTCTGCATGA GTGAATCAGT GCACATCTAA AATGCAGTTA CTGAAATTAT 000720
000721 AGAAGCCTCT CCTCGGCCAA TTGGCCTCCT TTGGAAGATA TGGCCTCACA CCATTCCATG TGCATGTGAA ATGTCTAGAC 000800
000801 GTGATTATAG AGTTTTCTTG AGAGCTGATG CATCCAAGGA ACATTTAAAG TAAGAAGCAA AGTAATGAAA AACGTTTCTC 000880
000881 AGAAAATAAA AATTGTTAAT ATGGTCTTAC CACATTTTCT AATGAAAGCA TGTTGTGAAT GCTCAGGAAG AAGAAGGTAC 000960
000961 AGTAATGGGA CTAGAAATCT GCAGCTTGGA TGGGAGCCCA GTCACCAATT ACCAAGTGCT ACAAGCCTGA GGCTACTTCT 001040
001041 CATTGAAAGG GCCTCCCAGG CATTGAGGGT GTCCACAGTT CAGTGAGACC TCAGAAGCCT GCACGTAGTT CATGCTCAGT 001120
001121 TCTTAGGATA ATCCTGTCTC TCCACAATTC CTTCAGGCTT GCAACACTCT CTTACCCCAA ATCAGCTCTT CCCCTACATT 001200
001201 TCCCCTTTCT ATCAATGGCA CTAGAATTCT CCCAAATTGA TCAATGTCAA CATCTCATTG TTTACTCACC CTTCATGTAC 001280
001281 TCACCTCCCA TTATAATGTC TAGATTACAG ATAGCCTTTA TTTTACCTCA CGGCATGTCC AGAAAGAATC TGTCTTAACT 001360
001361 ACCTACTTAC ACCAAGGCAT CAGCAATTCA TTTATTTATT CATTCATCTG TTATTGTATG AAGTATTGGC TAAGAGATCT 001440
001441 ATAGTGAAGT GGGGAGAGAT AGTCATTTAA AGTAACTGTC ATATAAGAAT GAGTAAGCAT TCACACCGTT GCTTCCACCA 001520
001521 GAACTCACAC TTTCTTCCTT ATATTTTTCC ATCTTTAAAC ACAAGTTAGG AGACACTACC TCCTGGAAGC CTCCCCTGAA 001600
001601 TCCACCCTCA GCTGACTAAA ATGTCTCTCC AATGGGCTTT TACAAGTGCA TATCTAGTTC ATTGCACTGA AATTTCACTG 001680
001681 ATTAGCTATT CATGTGCCTG CCTGCTCCCC CCAATTAGAC TGTCCTATTC AAAAACAGGG ACTGTGTCAT ATTCATCTCT 001760
001761 GTATTCCTGA TACTTAACAT AGAGCCCAGC TCATTGTGTG CATTGCATAT TTTTAAATGA ACACATGAAT GAATG
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Predicted Small Protein

Name ENST00000447529.1_smProtein_1214:1357
Length 48
Molecular weight 5453.4494
Aromaticity 0.106382978723
Instability index 81.6425531915
Isoelectric point 7.97857666016
Runs 6
Runs residual 0.0386170212766
Runs probability 0.125434257787
Amino acid sequence MALEFSQIDQCQHLIVYSPFMYSPPIIMSRLQIAFILPHGMSRKNLS
Secondary structure LLLLLLLHHHHHEEEEELLLLLLLHHHHHHHHHHHHLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLL
PiMo ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiii