ENST00000447380.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000447380.1

Source

Gencode19

Same with

lnc-POU3F3-4:7

Classification

intergenic

Length

1474 nt

Genomic location

chr2+:105050836..105129215

Exon number

4

Exons

105050836..105050981,105122324..105122761,105123690..105123864,105128501..105129215

Genome context

Sequence
000001 AGCCACATCC ATGCTATCTC CTAAAGCAGT CATTCTGAAA CCCAATCTGG GGACAGTGCA GACTAAATAA AATTTCATTT 000080
000081 TGATTTGGCC TCCCGCTGCG AATGGGACTG CTTTGTCTCA GCCGACAGAA CCAGCAAGCC AGAAAGGGAA TGAAGACATT 000160
000161 TGGAGAAGAA GCGTTTACTG AAAGGAGATT CCTGGGCTGG AGGAAAACCA TGATCTACAG TTCATGTTGA CAGATATTGT 000240
000241 ATTTTTGGTC CTAGATCTGA CTTTTGAAAT GACTTATCAC AAATTCAAAT TTAGCAATCA TGAGTGAAGT ACCCACGATG 000320
000321 TGCTAAGCAT CTACCTCTGC AGATAGAAGA ACACTTACTG TTCCTGAGCA TGGGAGGGAA TAGAAGTTCC TGGGTCCTGG 000400
000401 CCTCACCTCA TCAGGCACTG CCAAATTTGA CACCTCCTTC CTGTTCACGG CAGTCCTTTG CGATAGGGTA TTAGATGCCA 000480
000481 CCAAGTAGCT GCATAACTCA CCCATTTGGT CAGAGCCTGG GTCTAAGCCA GGTCTGACAG ACTCCAAAGC AAGCCCTGTT 000560
000561 TACAGCATGA CTGGGATCCA GTGGACGAGG GAACTGAGCT GTCAAAACTA AGTGACTTGA TTGAGGCCAT GCAGCTGGCG 000640
000641 AGGGGAGGAC CAGGATCTGA ACCCAACTGG GTCTCCCAAG CCTGGGCCAC TGAACCATTT CACCTCTTGG AAAAACTTAA 000720
000721 TGGTCAGAGT GGCCCACCCA GTCCATGGAC AGCATGGAGG ATAAACTGCT TCCCTAGAAA TCCTCTCCAG CATTCTTGCC 000800
000801 ACCACGACTT TGGGACACAT TGACCATGAG GAGGAGCTGG TCAATGATGG ACAGGAGTCC AGATTAGCAG AGATGTGGTA 000880
000881 ATAAGGACAC CGATGCCTAA ATACTTGAAA TATCCAATAG GAAGCATTCC ACCTTTGTGC AAATGCGAAC CACATCTCAC 000960
000961 CAAGTTCAGG CCAAGGCTGC CACCGGTGAC GTTTTGGAAA AGAAAAAAAA AAGCGGGGGG AGAGGAGAGA AACAGAGAAG 001040
001041 CAAGGAATGC AGAAGAGAGC AGAGGCCACA AAAACAGCAG CAACGTGTCC TGTGTATTCT GTTTCCTTGT AAAACTATGA 001120
001121 AGCATGTTAA GGAGATACTT CATTTTTTGA GGATTCATAC TCTTGTTTAT ATTATAATAA AAACAACCCA TGTTCTTTCT 001200
001201 AAAAATTTAG GCAATGCCTT CGTGCACATA AAAGTAAAAC AAAATCACCT GTAATCCTAC CACACGCAGA TCAGCACTTG 001280
001281 CTAATCTTTT CACAGGGATC CTAAGAATAT CCTATTCTCT ATAGAATATA GTTGATTTAT GTTACCTAAT AACTAACTGT 001360
001361 TAACCATTTT AAAATTCTTC AGTTTTACAT TATGCTAGAA AAAAGGAGCC GTCACTCTAC GTGACATTTC TGTATATTGG 001440
001441 TTTATTCATT CAATAAACAT TTTTTAAGTA CCTA
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Predicted Small Protein

Name ENST00000447380.1_smProtein_101:229
Length 43
Molecular weight 4960.7638
Aromaticity 0.119047619048
Instability index 66.7023809524
Isoelectric point 10.0479125977
Runs 9
Runs residual 0.038125376733
Runs probability 0.0487448232546
Amino acid sequence MGLLCLSRQNQQARKGMKTFGEEAFTERRFLGWRKTMIYSSC
Secondary structure LLEEEELLHHHHHHHHLLLLLHHHHHHHHHLLLLEEEEEELL
PRMN -
PiMo -