ENST00000447380.1
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000447380.1 |
Source |
Gencode19 |
Same with |
lnc-POU3F3-4:7 |
Classification |
intergenic |
Length |
1474 nt |
Genomic location |
chr2+:105050836..105129215 |
Exon number |
4 |
Exons |
105050836..105050981,105122324..105122761,105123690..105123864,105128501..105129215 |
Genome context |
|
Sequence |
000001 AGCCACATCC ATGCTATCTC CTAAAGCAGT CATTCTGAAA CCCAATCTGG GGACAGTGCA GACTAAATAA AATTTCATTT 000080
000081 TGATTTGGCC TCCCGCTGCG AATGGGACTG CTTTGTCTCA GCCGACAGAA CCAGCAAGCC AGAAAGGGAA TGAAGACATT 000160 000161 TGGAGAAGAA GCGTTTACTG AAAGGAGATT CCTGGGCTGG AGGAAAACCA TGATCTACAG TTCATGTTGA CAGATATTGT 000240 000241 ATTTTTGGTC CTAGATCTGA CTTTTGAAAT GACTTATCAC AAATTCAAAT TTAGCAATCA TGAGTGAAGT ACCCACGATG 000320 000321 TGCTAAGCAT CTACCTCTGC AGATAGAAGA ACACTTACTG TTCCTGAGCA TGGGAGGGAA TAGAAGTTCC TGGGTCCTGG 000400 000401 CCTCACCTCA TCAGGCACTG CCAAATTTGA CACCTCCTTC CTGTTCACGG CAGTCCTTTG CGATAGGGTA TTAGATGCCA 000480 000481 CCAAGTAGCT GCATAACTCA CCCATTTGGT CAGAGCCTGG GTCTAAGCCA GGTCTGACAG ACTCCAAAGC AAGCCCTGTT 000560 000561 TACAGCATGA CTGGGATCCA GTGGACGAGG GAACTGAGCT GTCAAAACTA AGTGACTTGA TTGAGGCCAT GCAGCTGGCG 000640 000641 AGGGGAGGAC CAGGATCTGA ACCCAACTGG GTCTCCCAAG CCTGGGCCAC TGAACCATTT CACCTCTTGG AAAAACTTAA 000720 000721 TGGTCAGAGT GGCCCACCCA GTCCATGGAC AGCATGGAGG ATAAACTGCT TCCCTAGAAA TCCTCTCCAG CATTCTTGCC 000800 000801 ACCACGACTT TGGGACACAT TGACCATGAG GAGGAGCTGG TCAATGATGG ACAGGAGTCC AGATTAGCAG AGATGTGGTA 000880 000881 ATAAGGACAC CGATGCCTAA ATACTTGAAA TATCCAATAG GAAGCATTCC ACCTTTGTGC AAATGCGAAC CACATCTCAC 000960 000961 CAAGTTCAGG CCAAGGCTGC CACCGGTGAC GTTTTGGAAA AGAAAAAAAA AAGCGGGGGG AGAGGAGAGA AACAGAGAAG 001040 001041 CAAGGAATGC AGAAGAGAGC AGAGGCCACA AAAACAGCAG CAACGTGTCC TGTGTATTCT GTTTCCTTGT AAAACTATGA 001120 001121 AGCATGTTAA GGAGATACTT CATTTTTTGA GGATTCATAC TCTTGTTTAT ATTATAATAA AAACAACCCA TGTTCTTTCT 001200 001201 AAAAATTTAG GCAATGCCTT CGTGCACATA AAAGTAAAAC AAAATCACCT GTAATCCTAC CACACGCAGA TCAGCACTTG 001280 001281 CTAATCTTTT CACAGGGATC CTAAGAATAT CCTATTCTCT ATAGAATATA GTTGATTTAT GTTACCTAAT AACTAACTGT 001360 001361 TAACCATTTT AAAATTCTTC AGTTTTACAT TATGCTAGAA AAAAGGAGCC GTCACTCTAC GTGACATTTC TGTATATTGG 001440 001441 TTTATTCATT CAATAAACAT TTTTTAAGTA CCTA |
Predicted Small Protein
Name | ENST00000447380.1_smProtein_101:229 |
Length | 43 |
Molecular weight | 4960.7638 |
Aromaticity | 0.119047619048 |
Instability index | 66.7023809524 |
Isoelectric point | 10.0479125977 |
Runs | 9 |
Runs residual | 0.038125376733 |
Runs probability | 0.0487448232546 |
Amino acid sequence | MGLLCLSRQNQQARKGMKTFGEEAFTERRFLGWRKTMIYSSC |
Secondary structure | LLEEEELLHHHHHHHHLLLLLHHHHHHHHHLLLLEEEEEELL |
PRMN | - |
PiMo | - |