ENST00000445817.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000445817.1

Source

Gencode19

Same with

lnc-ZNF678-1:1

Classification

intergenic

Length

1971 nt

Genomic location

chr1+:227581292..227618736

Exon number

4

Exons

227581292..227581405,227583220..227583315,227597456..227597585,227617106..227618736

Genome context

Sequence
000001 GTCCTTAAAA GAAGAGGGAA ATATGGACAC AGACATAGAC ACAGAGGAAG ATGATGTGAA GACACACAGG GAAAACATCA 000080
000081 TGTAAAGACA GGCTTGGAGT GGTGCACCTA CAAGCCAACA CAGAATCACA GCATCTCAGA GTTGGAAGGA ATTCTTCATA 000160
000161 TGACCACATT GATTTTTTTT TTCCTGTTGG TCGGCATCAG ATTTGTGAAG GCCCCTGGAA GATTGGATGG TGCCTGCCTA 000240
000241 TACGGAGGGC GGATCTTCCC CTCCTCGTCC ACTCAGACTC ACATGCAAGT CTCCTCTAGA AACACCCTTG CAGACACACC 000320
000321 CCAAAATGAC ACTTTTAGAG CCCCTAGAAG ATGCCTTAGA GATGAAAAAA AAAACACACG CATTTCCTAA TGAAGAGGCA 000400
000401 GCCAGATGCA GCCTCTGAGC CCTGACTGCA CAGTGTGACA GTCACTCAAC CCAACACAGC TCTCTTGCCT TTGCTGCAAC 000480
000481 CTCAACACCC TGCGTCCTGC CAAATCTCTT CCCATTTCAT CAGTCCATCT ATGCTGGTGT CCAGCCATTC CAGCCCACCA 000560
000561 TGGCATTTAA AAATCTTTCC AGCTCTCTGT GGAAGATCTG AGACTTGAGA AAGAGACTGT TGCTCAGGGC TGGACAGGAA 000640
000641 GGAAGTATGC ATTCCTGGCT CCCAGAACAG AACAGCAATG TGGGTGACCC TTCGTCCCCT CCCCAAGGCG TCCCCTTGGG 000720
000721 CCGACACAAA AATAGATTCT ATCCTCCTTG GTTCGTCTCC ACCTCCCTCG GGAAAGAAGA CACAGGCTTC GAGTGAGTCA 000800
000801 ACAGTATTAT CGGGGCTTGA CTGTCTTTCA GGAATGACCA GATGTTGGGA AGAGGATAAT GTGCCATTTC CTTTAACAAA 000880
000881 TAGTCCGGGC ATCTGTGCAT TTCCTTTTGA GCCAGCTCTT CAGGAGACTG TGCTGCTGTG ACAGGGAAGG ACGAATCACC 000960
000961 CTGGTTTCTA CTCTCACGGA TACTAGGGGG CTCCTTGAAC CCTTTGGATT CCAGCCCTCC ATTAAGAAAA TATTTCTGTC 001040
001041 CTTTGTATGC ATGAGTGACA CCACGAGAAG ACAGCATAGG GAGTGGTTAC AAGCAAAGAA TTTAGAGACA AAATAAATGC 001120
001121 TCTAAGGGAA AAAGACAAGT AGCCAAGGAA CGCTGGGAGA GGGCTTGGAG GAAGCAAATT GTTCATCCAT TCCCCCAAAT 001200
001201 CAGTGGTTCT CAGTAGAAAA CCAACATGAG TAACATTTGC CTGGGAACTT GTCTACCACC CCAGCCCTAC TGAAACTCCA 001280
001281 GGGGTGAAGC CCAGCAATCT CCTTTGACAA GCCTTCCAGG AGATTCTGAT GTGAGCTCAA GATTGAGAAC TACTGATCCA 001360
001361 GATAGATCTT AGCTGGTCCT AGGGCTTCCC AGAAAGCATT TTTAAAAAAG CAGAGATTCT CCTCCACAGG AGGCCTACAT 001440
001441 GCTGCCACCT CTGTGGCCAC CATGTCTCTA GTGATCCCTG AAGAGTTCCA GCATATTCTG CGAGTACTCA ACACCAGCAT 001520
001521 CGGTGGGCGG TGGAAAAAAA GCCTTTGCCA TCACTGCCAT TTAGGCTGTG GGTCGAAGAT ATGCTCATGC GGTGTTGAGG 001600
001601 AAAGCAGACT TTGACCACAC CAAGAGGGCA GGAGAACTCA CTGAGGATGA GGTGGAACGT GTGATCACCA TTATACAGGA 001680
001681 TCCATGCCAG TACAAGATCC CGGACTGGTT CTTGAACAGA CAGAAGGATG TAAAGTCTGG AAAATACAGC CAGATCCCAG 001760
001761 CCAATGGACA ACAAGTTCTG TGACCACCTG GAGTGATTGA AGAAGTTTCA GGCCCATAGA GGGCTGCGCC ACCTCTGGGG 001840
001841 CCTTCGTGTC TTGAGGCCAG CACAGCAAGA CCACTGGCTG CCATGGCTGT ACTACGGGTG TGTCCAAGAA GGAATAAGTC 001920
001921 TGTAGGCCTT GTCTGTTAAT AAATAGTTTA TATACCAAAA AAAAAAAAAA A
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Predicted Small Protein

Name ENST00000445817.1_smProtein_677:940
Length 88
Molecular weight 9360.6521
Aromaticity 0.0689655172414
Instability index 71.3896551724
Isoelectric point 4.60650634766
Runs 13
Runs residual 0.0111658456486
Runs probability 0.0118013941543
Amino acid sequence MWVTLRPLPKASPWADTKIDSILLGSSPPPSGKKTQASSESTVLSGLDCLSGMTRCWEED
NVPFPLTNSPGICAFPFEPALQETVLL
Secondary structure LEEEELLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLEEELLHHHLLLLLLLLLLL
LLLLLLLLLLLEEELLLLHHHHHHLLL
PRMN -
PiMo -