ENST00000445174.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000445174.1 |
Source |
Gencode19 |
Same with |
lnc-FN1-3:2 |
Classification |
intergenic |
Length |
3690 nt |
Genomic location |
chr2-:216476286..216708259 |
Exon number |
10 |
Exons |
216476286..216478461,216480000..216480357,216485841..216486073,216487409..216487484,216488835..216488958,216605600..216605744,216608537..216608637,216612027..216612117,216614966..216615140,216708049..216708259 |
Genome context |
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Sequence |
000001 GAATCCAGGA ATTGGAAGGA AAAGAAAACA GTTCTCTATT CATGCTAGTT AACTAATCAA TTCAATATGT ATTAACTGAG 000080
000081 CACGCTACAT GCTAGGCACT CTTCTAAGTG CAGGGGAGAC AGCAGTGAAG AAAGCAGACA AAGTCTCTGA ACTCCTGTGT 000160 000161 CTTCTATTCA AATGGGGAAG ATGAACAATG AACAGATAAC ACAAATAGAA GAATGCGTGA CCTATCCAAT CCTTCCTCTC 000240 000241 ATGGAAACAC CAACTCATCC ATGCCCTCTG TGCTGAAACT TCGTCTCAGC CTGCTGGAAT CACCTGCACC CCATGGGAAC 000320 000321 TGTAGCCATA TCTTCAGTCC TGTGAGCCCC CGTCATGGCC TGTCACAGGA GTAAATGAGG AGTAAGGCCC AGAATACTCA 000400 000401 GTACCTCTCA ATGACCCTCA GACGCTGTAG GAAGAGGATT GGTTCACCTT TTAACCCAGA ATTTCTCACA TTGAATGGAC 000480 000481 AGGATGCATT CCAAGAGGCC AGAGTATGTG CATCTCAGCT CCTGATGGTT TCCACCACCA CCATTACTTT CTCTATGTCA 000560 000561 AGATACCTGG GAAGCCGGAG ACAGGCAGCC CACGCACTGC AGTGATGAAA GGACTCTCCA ACGAGGCAGA CAGGAACCCT 000640 000641 GCAGTTGGGA ATACAGAGCC TTCTCCTATG GGAAGACCAC AGGAAAAAGA AACACCCAAG GGGGAGGCAT GAGTCTTTGT 000720 000721 GAAAGTTGTT TTAAGGCAGA GTATCATATC GCATCAAAAC CGCTCCATAA GTCCTGCCAC TCCACGTGCA ATGCCATGAA 000800 000801 CTTGAAGAAA CTGCTGGTAA GAGAAAGCAA ATGCTGTGAC CAGGCAACTG CTGCAAACCA ATGGGCTTTG GGGAACTGTG 000880 000881 CTTCCCTTCA GAAAGGAAAG AGTATTTAAC GATGAAAAGG AAGGATTGTG TCTTACTTAT ACTTACGGGC TTGTGGTTCA 000960 000961 GCGGAGACCA CACTGGACTG GACTGAACAG ACAACTGAAG GGCTCTCTCT ACCTTTCAGC ATCTCTGTCT GCCTTTCTGA 001040 001041 CTACCTAAAA ATTACTGCAA CCTCTGATTC TGTTTCTAAG GTGGATTTTC CCTACTCATG CTTCCTAGAG ATTTGGTGAG 001120 001121 GATTTGTTGA GTCATGGGAC ATTTCAGCTT GCCAAGGCTC CTTTGCTGGC TGACTTTCTG CTAATTCTGC AGCTGGATGC 001200 001201 AGCAGAAGAG GATGGAAGGC AGAAGGAAGG GAAAAGTGGC TTCCTTCCCG ATTACTGCCA GTCCTGTCAG TGTTGCCCAA 001280 001281 GACTGCCAAT TTGTTCCACC AGCAGCAGTG CCTTCGGACT TCTGCCTCAG TGTTTTCCAG CAGTCCCAGT GAGAGGTGAC 001360 001361 AACGCGCTAG CAGCCCTCAC TTACTCTTGG CGCCTCCTGG GCCTCGGCGT CCACTCTGGC TGCGCTTGAG GAGCCCTTCA 001440 001441 GCCCGCGGCT GCACTGTGGG AGCCCCTCTC TGGGCTGGCT GAGGCCGGAG CCAGCTCCCT CTGCTTGTGG GGAGAAGAAT 001520 001521 CTTGGTCGTC CAGAAAGCTT GCTATAGCTG CCCAGCATTT GCCTCCTCCA CAAAGAAGGA CCAAAAGAAC AAGTAGACAA 001600 001601 TCACATGCCA AATAAAATGT CTAAAGGAGA GCACTGAAGC TCAGCAAAAA CGTTACAAAG ACCCTCTGAG GTGCAGAAAC 001680 001681 TCGGGATGGC AGCACAAAGA GGAAAGCAAA GCAGCCGGTC AGGATCAGCT CACAGTCAAG GGCGCCCCGC CTTGAGTAGG 001760 001761 AAATGTAAGC AGGAGATGCC CTGCAGGCAA CATTCCCACC ACAAATGCCT GCAAGCCTAG CTGTAGGAGA GCCTCGCAGT 001840 001841 GTTGAGCCCA GTGCGGGAGC TGCCTGGAGT CTCTGTGACT ACATTACTCC AGAGAGGCCA CTGGGTCCCT CCTTAGTCCC 001920 001921 TGGGACCCAA GCCGCTGCAG CACAGTATCA TTTTGAGGAC AGAGCCACTG CCAGAATGCT TCCTGTCCTG GGGCCCGGTA 002000 002001 ACCCCTGCAT GTCCTCATCA CTGGAGCCCC AATATCATTC CACAGTTGTA TGAGGAGTAA AAATAACTAT AAATAAAGAT 002080 002081 AACTCAAGAA TTCTATAAGC AAGCATACAC ATGAAATTCA TTTTATAAGA GGAAAGCTAA CTCCATCTCT CTTGAAATAT 002160 002161 GGAATAGGTT CTTGAAGCAA TTCTAAATGC TGATCTGCTG GAATGATGGC TTCATTGCAC AAGAATTCTG CTTAGTTCAT 002240 002241 TGAAGTCTCC TTGAAGAAGT CAGTCTGAGA ATGGGGGAAT TCCGTTGTTG GTCAGAAGAA TTCTTTGGTC ACTATTGGAA 002320 002321 GTGGGTTCAG TTTAGGGTGA CTATTGATCA ACAGGGTTCA TGGGTTTGCT AAAACTCATT TCAGGCAAGC TTTGGAAGTG 002400 002401 CAGTTCGCTT GGTGCTTATG GGGTTAAAAA CAGGAGGAAG AGAATTTCAC ATTATTGGAG GGCCTGAAAG GAAACTGATT 002480 002481 CCCGCAAGAT GCTCAGACAA GATCAAACCC AGCCCCTTTT CTGGTTTGGA ATTTCTCTGG GCTATAAAGG TAGAAGAAAA 002560 002561 GGCCCTGCAT GGGCCCACTC TAAGTGCTTG GAGGTTTTAG ATAATTTTAT TAAATTGTAG AATCTTAAAC AGAACTACAA 002640 002641 GGTTGCTTTT AAAACCAGAT CTCAGATTTC TTTGAGCTAA CAAATGGTAA AATGTATCTT TAGTATTAGA GTGAGATAAA 002720 002721 GGTAGTTATA ACTTTTTTTT TTACTTATTT TATGTTAACG TATGCAACAA AGGGTACAAA TTGTAGGTAC GCAGCTCATT 002800 002801 GAACTTTTAT GTCTGCACAT GCCTATGAAA CCAACACCCA GAGTAAGATG CGGATAATTT TCTGCTCCCC TGAAAATTCC 002880 002881 CTTGTGCCTT TTCCTCATCA GTACCTCCAA AGGTAACCAC TATTTTGATT TCCATTACCA TAGATGAGTT ATACTTGTTT 002960 002961 TTGAAAAGAT TATTTGAAAT GTGTAATATA AATAATAGCG GTTGCTTATC TTACAGAAAT ATCACTGAGA ATTCATTTCT 003040 003041 TCTCTCCTTC ATTTATTCAT TTGTTCAAAA CACTGTCTAG TACCAACATT GTCCACCGGG CGTTGAGAAT ACAATATTGA 003120 003121 AGAAGAGTCA CTGCCTGCCC TCTGGAAAAA TCAGAGTATT TGAAAGAATA CACACAAGTA AACAGGCAGC TATGGCAAAG 003200 003201 TGGGTAAAAG CTGCAAAACA GGGAAGTTTC GCCAAGTGTC AGATGCCAAG AAGTGTCAGA TGCCAAGAAG AAAGGGTGCA 003280 003281 TGACATAGAC TTGGGGGGGT CAGTAGTGGT TTCTGGAACG AGTGACATTT AGACTGAAAC TGGAAGGATA TGAGTAAGGG 003360 003361 CTAATCGGAC CAAGATGAAG AGATACAGAA GCAGAAGGAA CAGTAGGAAC AAATGCTCAG AGGCAAAAGA AAGCTTTGAA 003440 003441 TATTTGAGGA ACTGAAAAGC AAAACAACAA AAAATAGCCA TCCCTTGACT AGACAAGTGA CCTGGGGTCA GATCCTGAAG 003520 003521 GGCTTTGCAG ATCACTTTTC CGCTTGTAGA CTTTGTACTT GACTTTAAGG GCCATGGAGA GCCACTGAAG CATTTTCAGC 003600 003601 AAGGGACTGT CATCAGCAGA TTGGTATTTG TTTTGAAGTA GCACATGTAA GAGAAAATAA CAATATGGAC AAATAAAGAG 003680 003681 TTTGAAAAAC |
Predicted Small Protein
Name | ENST00000445174.1_smProtein_374:604 |
Length | 77 |
Molecular weight | 8672.9228 |
Aromaticity | 0.0789473684211 |
Instability index | 66.1118421053 |
Isoelectric point | 11.206237793 |
Runs | 13 |
Runs residual | 0.0296430732002 |
Runs probability | 0.0464038699333 |
Amino acid sequence | MRSKAQNTQYLSMTLRRCRKRIGSPFNPEFLTLNGQDAFQEARVCASQLLMVSTTTITFS MSRYLGSRRQAAHALQ |
Secondary structure | LLLLLLLLHHHHHHHHHHHHHHLLLLLHHHLLLLLHHHHHHHHHHHHHHHEELLEEEEEE HHHHLLLHHHHHHHLL |
PRMN | - |
PiMo | - |