ENST00000444463.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000444463.1

Source

Gencode19

Same with

lnc-PRPF6-1:1

Classification

intergenic

Length

4303 nt

Genomic location

chr20+:62665697..62670354

Exon number

4

Exons

62665697..62667400,62667490..62669555,62669649..62669801,62669975..62670354

Genome context

Sequence
000001 GGAGATCCCT GCCTGCACGT GGGGCGGTCC TGGTAGACCA GAATGTGGGT GTGGGTCCCC CTTCCCTGTG GTTCTGGGGA 000080
000081 CCTTGAGGAC ATGGTCAATC CCGGGCAAGG GACCTGCCAC CCCTGTATGG GGTCAGGAAC TGCTGGTTGG TCTCTGCTGG 000160
000161 GCAGGCAACC TGGGGTCCAG CTCAAATCGT TGGAATGTGG AAGTCCTTCC TCTCGCCCCG TCCTGAGGAG CAGCTGCAGG 000240
000241 AGCTTCATGA GTGTTTTCAC TGGAACTTGT GGAGGAGTTT CCTTTGATCC CTCATGGAGA GACGGAAGCA TGAGGGAGCC 000320
000321 CTCAACATTT ATTCTGAAGA TGAAGAGAGT CCTGCAGCTT TTTGGAGTTT GTGAAGTCAG CCCGGCCCTG TACAGATGTG 000400
000401 GAAACCGAGG CCCAGGAAGT TTGTGAGCCA GCCCGGCCCT GTACAGGTGT GGAAACCGAG GCCCAGGAAG TTTGTGAGCC 000480
000481 AGCCCGGCCC TGTACAGATG TGGAAACCGA GGCCCAGGAA GTTTGTGAGC CAGCCTGGCC CTGTACAGAT GTGGAAACCG 000560
000561 AGGCGTAGGA AGGAAGCCCT TCTCTGACCT CAGAGCTGAA ATGGCCAGTG CTGGGTGGGC ATTGAGGGGT CACACAGAAA 000640
000641 AGAATGTTTC AGGCCATGTT CAGGGGATAC TTCCTGCAGG GCCCTTGGAA AGTTCCGGAG CGCTTACATT GTCCATGTGT 000720
000721 GAGTGTCTCC TCTTTCTTGC CTGTGTGGGG TTTTCTCAAA TGCTTTGAGT TGGCCAAACC ACAGTTGTGC GCCACTTAAC 000800
000801 AGTGCGGATA CATTCTGAGA AAAACCTCGT TAGGTGATGT CGTCTTGCAA ACATTAAAGA GTGCATTTAC ACAAGGCTGG 000880
000881 CAGGCACGGC CTCCTGCACC CCCAGGCTGT GTGCCCGGGT GCCAGAGCCT GGGGCTCCTG GGCTGCAGAC CTGCACAGCC 000960
000961 TGTCACAGCA TTTAATCACA TCCAAACACG GAAAAGGCAA AAACGTAAAG ATGCAGTGTT ACAATCCTAG GGGACTCCTG 001040
001041 TCACCTGTGT GGTCTGTTCT TGACTATTGT GAGTCACTGA CTTTTCCCCC TGGGAAACTA CCTTAACTTG TCTTCAACTG 001120
001121 AAATTTTTTC AGCCTGCAAA GATGAGTTGT GCCTCAGAGG TTGCTCGTGT TCTGAGGTGC CTCTTCACCA CTGCCTGTCA 001200
001201 GGCTGCTAAC CAGAGTGCCC CAGACCACAG CAGAAGCGAC AGCAGCCAAG GATCGGGGGA GCCCACCCTG CTCCTGGGTA 001280
001281 TCTTTACGGC AGGCAGCAGA GTAACAGCCT CAGACTTACC TCTTCAGCCA GAGACCCCTC AGCCCAGGAG GAGTGAGGCC 001360
001361 GGGCCAGCAG CGGGGGCCCG GGAAGCCCCA TGTCTTGGGA CCTGCTGGGG CAGGGCCCCC TGGATGTCAG GCTGCAGGTC 001440
001441 CGGCAGCTGG GGAGGGGATG AGGGCCTCCC ACCAGCTCTG CCCATCAGCC AGATCCCTGG GAGAGGCAGC ACTTGCTGGC 001520
001521 CACAGAGTCG GCCCCAGTCT CACCTGGCTC CCCTCCCCCA CCAGCTGGGC CCTGCACTGC CCCAGCCCAC GCGGCGCCTC 001600
001601 ACCCCTCCTT GACAGAACAG TATCTCTGGG ACGGACAAGT TAATCCAAGA CCCACAGTAG CCCTGGATCC CCTGGGAGAG 001680
001681 GTGGCTGCCC AGCTCCAGGG CCAGCTTGGA GGAGCCAACT TCAAAAGCCT CCGCCTGGCC TGCCCCTCTG CAGTCCTCCA 001760
001761 GGCAGCCTGT CCAGGGAAGC GGTTGGCTGG TGTTGGACCT GGTGCGGCAG TGCACACCCT GCCCAAGGAC CCCAGGATCA 001840
001841 TGTGCGTGGC CTGCTGGCGG GAGTGAGGGA GGGCAAGACC CTGAAAGGCC CATGGTGAGC AGCTGTGGGC CTCCTCTAGG 001920
001921 GAGGGGGCTT ACTTGGGTGG AGGGGCTGGG GGTACACACA GCTCAGGAGA CACTGCTTGT TCCCCTGAGC CCCACCAGGA 002000
002001 AATCTCCGGT TGGCTCTGGT CACTGCGTCC CTGTGGGTGG CACTGGGTGC ATGTGCCCTG GCTTCTGGCA GTTGGGGGAG 002080
002081 GGGGGCTCCT GGGTGCCGGG CAACCCTGTT CTAAGCTGGG CTGAGGCTTG AGCCTGGAAG TGGTACTAAC AGGCCAGTTG 002160
002161 GGACTCCCAG GGCAGCCAGT CTGCCCCACC TGGGTGGGAC ACAGCAGGTG CTGGACATCC TTGCAGCTCC AGCTGGCCTG 002240
002241 CTCAGGAGTC AGGCTCTGGT TCTCGCTATG ACCTCTGACC CAGAGCAGGC AGAGGGAATG ACGTGGCAAT TCTGAGCCCA 002320
002321 CCAAGTTGGC TGTGGCGTGT GTGGTTGGGG GGGTCAGGTT TCAGGAAGGG GCCACAGCAA GCCATCTGCT CTTCCAGCCA 002400
002401 TTGCTGCTTT GTGCTCTGAG CAGGAGCTGC CACCGCCCAC CAGGCCCCCA GCTCTATGCA AGGGTTGGGG TGCTGCTTGT 002480
002481 TCAGGCTCCC CTGACAGGGC TAGGAAGCCG AGTCGAGTCC TCTTATCTTG GTTGGGTTCG CATGATTAAT TTCCAGCCCT 002560
002561 AGATCTGCTG TCTGACTCCA TCCTGGGGGC CCAGGGGAAG GGTTGGGGCT GGCCCCTTTT GGGTGGCTGG GAACCTGGGG 002640
002641 GCCGTCAGCT GTCTCCTTGA TGTTTGGGCT TTATCCCTGC GGGCGCAGGC CCTCCATTTT GGGTCGGGGG AGGCCTGTGG 002720
002721 CACAGGCTGC CCGGAGGGAT GGCGTGGGGC GGCTGGTACA GGCAGAGGGG CCTTTTGCGA CTGTTGGTTG GGGCTGGATG 002800
002801 TGGTGGCTCC TTCCTCCTCT ATAGCTTCTG GGTGTCCCCC TAGCTTTCCC CTTCCAATAG GGTGTGGCTT GGAGCTCTGA 002880
002881 GCCCCTGCCC CAGTTGGGTT GGGGGTACAA GGAGTCCCCA GTTCCCACGT CTCTGTGAGC TAACCCAGAG GGCGCCAGTA 002960
002961 TGGGAGGTGT GGAGTTGAAT GGGCATGGCC ATGAGTGAGA CAGGCTGTAC TGGGACAACT TCCTACTGTA CCCCCAAGAG 003040
003041 CCTGCAGACC AGCCCCACTA GAGCTGTACG GGGCTGGTGG GGGGCCCTGC TCTGTGCGGT CCTGAGGGTG CTCCACCCCT 003120
003121 TGCTGGCCCC ACTCCCACGT GGACCACAGA GCCAGGCTCT CCTGACTCTG GGCCTGCCCC CTCTATCTCC TGATGGGTTC 003200
003201 TTCAGGACTC AGTGACATCG CCTCCCAGCC GACATCACTC ACCCCTTTCA CATCTTTGCA GGGAGCATAG AACTGTCTGG 003280
003281 TTTGCAGACC TATCTCTTGT GTCTCCTGAT TTATCCCGCC AGGCCTGTGC CTACAGCCTT TCTTGATTGG TGACACGTCC 003360
003361 ATTTCATTCG CTCAGAGATC CCGTGGGGTG GGGCAGGGGG TGGGGCTTCT ACGGAAACAA AGTGCAGGTG GGCTGGCTGC 003440
003441 TCCCTGTGCT GGGAACACCC CCCAGGCCTA ACCCCAACCT GCTGTCTCCT CCAGGTACCC CCTAAGCCTG CACTCTGGGC 003520
003521 GCTCCTGCTG GCGCTGCTGG GGACCGCGCC AAGCCGCGCC TATTCCCCGG CCTGCAGCGT CCCCGACGTG CTCCGCCACT 003600
003601 ATCGCGCCAT CATCTTCGAG GATCTGCAGG CCGCCGTGAA GTGGGGCGGG GCGGGGGCCG AAAAGACCAG GCCAGGCTCC 003680
003681 AGACACTTTC ATTTCATACA GAAAAACCTG ACTAGACCCG GGAGCTCGGG ACGGCGGGGA CGGCCTCGGG CCTCCTGTGG 003760
003761 CGCCCAGAAG GAGCACAGTA TCCTCCTGTC CATCTCGTCC CTGGGTCGGA CCCTGCGCGG GGCGGTGGCC GGGGGCCGCC 003840
003841 GCGGGGCCCT GGAGAGAGCT GCTTGGACCG TGGCTGTGCG CACCGAGGCG GTGATGCGGC GCCACTGCAG GACGCTGCGC 003920
003921 CAGCGGAGCC GGCGGCCCAA GATGCGCCCT GCCCGGCGTC GCGGCGGCCG AAGGCAGCTC CTGCTGCGCG CCCTGGACGC 004000
004001 CGTCGCCACC TGCTGGGAGA AGCTCTTCGC GCTGCGCGCC CCGGCCTCCA GGGACTCCTA GCGCGGCCCG TCCTGGCCCT 004080
004081 GCGCGGGGAG GAGAACCAGC GGGGCCGCGG CAGAGCCTGG AGACGCGCCT CGTTCTGTAG ACTTGTTGGT GACCTCGGCC 004160
004161 CCTCGCTCGA CGCAGCCCGC GCTCCCCGGA GGGCCCAGGA CTTGGAGAAG GGAGCGCGCC TGGCCGCCGC TGGGTCACGG 004240
004241 AGGAGGCCCG CCCTCCACGC GCCGAAGGCC TCAATAAACG GAGCTGGCGC TGCGGGTCCG GCA
[back to top]

Predicted Small Protein

Name ENST00000444463.1_smProtein_2978:3214
Length 79
Molecular weight 8311.6862
Aromaticity 0.0641025641026
Instability index 56.7320512821
Isoelectric point 9.60748291016
Runs 9
Runs residual 0.0182926829268
Runs probability 0.0402755696873
Amino acid sequence MGMAMSETGCTGTTSYCTPKSLQTSPTRAVRGWWGALLCAVLRVLHPLLAPLPRGPQSQA
LLTLGLPPLSPDGFFRTQ
Secondary structure LLLEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHH
HHHLLLLLLLLLLLEELL
PRMN -
PiMo -