ENST00000444210.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000444210.2 |
Source |
Gencode19 |
Same with |
lnc-FSCN1-2:1,NONHSAT118918 |
Classification |
antisense |
Length |
3251 nt |
Genomic location |
chr7+:5515435..5519442 |
Exon number |
2 |
Exons |
5515435..5516661,5517419..5519442 |
Genome context |
|
Sequence |
000001 CTAAATCAAG TCCATTTTAT TTGAAATTTT CCACATGCCA CACATGTACA TGAAAATTCC CATCCAGAAT GTAGTTTGCT 000080
000081 ACAGTGAACA CCAATGTCAG GAGCAGGCAT CACCGTGAGA CGCCACGGGG GCAGGTCAGC GGGACGGGGA CAGGGAGGTT 000160 000161 GGTCATCGAA AGGCAGGTGA TGCATGTCGT GTCATTTAGC ACCTGGTCAT GAGATACGGC GAGACCCCCA GGTCCAGGGA 000240 000241 AAGGTCTCCC CTTAAAACCA CGTGGAGCTC TGCTGTCTCT GGGCAGTCTC ACGTGGACAG ACAATGCTCA GAAGGTGGCG 000320 000321 AAGGGGCTGG AGGGAGATAC CACCGACGGC TGCAGGGGAG GGGCACGCAC ACACACAGGC ACGCACATGC TTGCCCATGA 000400 000401 ACACCCCCCG GGCACACACA CACCCTTGCA CACTCCCCAC CCTCCCTCCA CCCCAGACAC ATCAGCACAG CGGTCCAGGC 000480 000481 TCTGGCTCAC TCCCCGGGAG GCTTCTGTGG CCAGGGTTCC CATGGCGGGT CTGGTGGCAA CAGCTTGGAG AAAAGCCTCC 000560 000561 CGGGACCAAC CCTCATTCCC AGGTCCACTG ATCTGGGGTA GGAGTAGCCA AGTGTTCTGA CAGGCGGTTT TCCCGTAAAC 000640 000641 CGACCCCTTC AGCGTTTCTG CTTTTTGTTG TTTGTTTTCT GAGACAGGGT ATTGCTCCGT GGCCCAGAGT GGAGGGCAAT 000720 000721 GGTGCGATCT TGGCTCACTG CAACATCCAA CTCCTGGGCT CAAGCAATCC TCCTGCCTCA GCCTCCTGAG TAGCTGGGAC 000800 000801 CACAGGCACA TGTACAATGC CCAGCTAACT TTTTTTTTTA TTTTATGTAG CGATACAGTC TCACTATGTT GCCCAGGCTG 000880 000881 GTCTCGAACT CCTGGGCTCA AGCGATCCTC CTGCCCCAGC CTCCCAAAGT GCTGGGATGA CAGGCGTGAA CCACCACGCC 000960 000961 CGGCCCCTCC CATGTTTCTC AAAGGAGCTT TAGAGAGCAG AGGAGCCCGA GTCACTGCCA CCACTGGGTT CCTCAGTGTC 001040 001041 TGTGGGGTTT GTGTTCATCA TGCCCAGTAG ATCTAGAAAC TTCTTTTGTT TTTTTTTTTT TTGAGACGGA GTCTCACTCT 001120 001121 GTCGCCCAGG CTGGAATGCA GTGGTGCGAT CTCAGCTCAC TGCAAGCTCC GCCTCCCAGG TTCATGCCAT TCTCCTGCCT 001200 001201 CAGCCTCCTG AGTGGCTGGG ACCACAGCGC TGCCTGCTGG GGGATCAAGG TCCCCGCATC CAGGCCTCCA GCACCCTCCA 001280 001281 TCCCTGCAGG AGCACTGCTG GCACCGCCAA GGCCGGAGCA CTGGTCTGGA GCTTCATTGG CCGGCAGGGG CCCAGCCCTC 001360 001361 AGCTGTTGGA GCCCTACGGC TCTAGGTCTG GCCCCTCCAC AAGCCCTCCA GGCCCACGCC TGAGCCCAGC CCCGGTCCCC 001440 001441 TGGGTCCAAC GGCCTGTGGC TCTGGGTCCG GACCCAGGGT GTGGTTGAGG GAGGGCGCTG CTGAGCTGGC AGGCAACCCT 001520 001521 TGTGTGTTTG CAGCGCAAGA GGAGCTCAGC CCGTCCTGGC TGCCGTCCTG GGTCGAAGCA GCAAGTGTCT TCCCGCCCTG 001600 001601 TGCACAGACA GGTCCCAGGA GGGCCTCTTG GAGAAGAAAC CGCTCAGGCC CATGTCCTGG CAGGGCCTCT GGGGGCAGCA 001680 001681 GATGGCAAGG ATAGAGCCCG CCCCCTCTGC TGCAGAAGGA AGCGGCCCTC ACCCAGCCCC CCTGGGCTGG ACGGGCCGTT 001760 001761 GAAAACAAGA AAAGCCTTCC ATAGCAGAAA GGAGTACTCA AGGCCCAGAA AGGCAGCTTT GCTCTGGGTC ATCAGGCTCA 001840 001841 AGTGCCTGCT CTGGGCCACC TTCGGAAGCC TGGTGGAGCC GAGTGTTGCC TGGTGACGTG GAGCAGGAGG CGGGGCGGAG 001920 001921 GCTGCGGGAC ACGGGGCTGC AGGGCCGGGA AGGGGGTCAG GAGAATAAAT AGCAGCTAGG TGTGGGGTGA GCTGGGAGCA 002000 002001 CAGGCAGGAG GGGGCAGCCA GAGAGGTTGG GGCTCTCCCT TTTAAAGAAC AAAGGGATAC ATACCCTTTC CCCTCCTCCC 002080 002081 TCCCTCCAAC CCCACAGTCT CTCCCTCACA TACACACACG GAAGACGTGA CTCACACACA CATGCACACA CAGGGCACAG 002160 002161 GTACACGAAG GCACACGTGC ACACACAGGG CACAGGTACA CGCAGGCACA TGTACACACA GGCACACGTG CACGCAGGCA 002240 002241 CACGCATGCA GGCACATGTG CACACACAGG GCACAGGTAC CCGCAGGCAC ACGTGCACGC AGGCACACGC ACGCAGGCAC 002320 002321 GGGGACAAGT GCTGACCACG CTCCTCCAGC AGGCAGCATA TGGTCTGCTG CTTAACAGCC GAGCTCTGCC AATTGGGGAC 002400 002401 CATTAGGGTG GGTTCTTTTC CCAGCATCAA ATGCTGCAGA ATATAAATTG CAACTAACGC TGGTGCCAAA ATAGCACTTA 002480 002481 GAGAAAATAA GCACGTTATT AACATCTGGT GAAGCCCATC TCGGGGGTAG CAGCAGCGGA AATTCTTGCT CTAAGTCAGA 002560 002561 GGATGGTTGC AGGGGACACT AAAAATACAA GGTCCACTGT TTCAGGGGTG CTTTCCAAGG CACTGCACCC CAGCCTCAGG 002640 002641 AACAGCCCTT CCCCCAGTCC TGTCTATGAG TATAAATTAT GCTGCTGGTT AAAACCGCTT GCTCATGAGA ACAGGACACC 002720 002721 CAGGCGCGAT CGTACACACG CTAGGATGCA TTCCTGGAGC AGACGCAATT CTCTAGCCCG AGTGGGGAAT GTTCTGGAGG 002800 002801 AAGGAGTGGG GCGGAGCTGC GGTGCCCAGA GACACAGGCC CCCTGAGGGT CCGGGAACCT CCCAGGCCAC TCGCCCCTGC 002880 002881 CTGGTCGGAG AGCAAGAAGT GGTCAGTCCC AGGAGGCACC ACACCACCCG ATCTGATCGC CGCGCCTGGT GGTCTCCAGG 002960 002961 TGCCATTTTA AAGCTCTAAA GAAATGCCCA GGAACTGTGG GTGGGGGGGG TGCTCCCACC ACCTCTGAGA CCCTCATCTA 003040 003041 CAGCCCCTGC CCCCTGGGGC CGTGGGCAGC TGGTCCTGCG GCCTGCAGAC TAGGAGACGG GGCCTAGGGG TGTGGCTCTC 003120 003121 ACAGGCCATG ACAGGAGGGC CAGGAGGCCT CTGGGAGGCG AAGGCTTGGT CTGGTGTGGG TCCCACCATC GGGCACTGCT 003200 003201 GGAATCAGCC TGCAGAAGGG TCCCTCTGGC CAGGAGGCAA AGGTTCTGCA C |
Predicted Small Protein
Name | ENST00000444210.2_smProtein_809:1069 |
Length | 87 |
Molecular weight | 9459.9434 |
Aromaticity | 0.093023255814 |
Instability index | 58.0523255814 |
Isoelectric point | 9.02911376953 |
Runs | 11 |
Runs residual | 0.0117146824019 |
Runs probability | 0.0440574264104 |
Amino acid sequence | MYNAQLTFFFILCSDTVSLCCPGWSRTPGLKRSSCPSLPKCWDDRREPPRPAPPMFLKGA LESRGARVTATTGFLSVCGVCVHHAQ |
Secondary structure | LLLEEEEEEEEEELLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH HHLLLLEEEEELLEEEEEEEEEEELL |
PRMN | - |
PiMo | - |