ENST00000444070.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000444070.1 |
Source |
Gencode19 |
Same with |
lnc-AL353997.5.1-1:3,NONHSAT146369 |
Classification |
intergenic |
Length |
2552 nt |
Genomic location |
chr17+:18323282..18328411 |
Exon number |
7 |
Exons |
18323282..18323497,18323647..18324330,18325495..18326378,18326627..18326863,18326971..18327048,18327803..18327951,18328108..18328411 |
Genome context |
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Sequence |
000001 TTGTTCTCAC TTAATACATG AGAACATGCA ATATTTGGCT GTTTCTGCGT TAATTCACGT AGGATAATGA CCTTCAGCTG 000080
000081 CATCTGTGTT GCTGCAAAGG ACATGATTTT GTTCTTTTTT ATGACTGCCT AGTACTTTGT GGTGTATATG CACCACATTT 000160 000161 TCTTTATTTA ATGAACCGTT GGTGGATACT TACCTTGGTT CCATGACCTT GCTGTTAAGT TGAACTAATT GACACCTACC 000240 000241 ACCGCTTGCT GGAGGTTGAG GACGCCCAGT GAGTGTGCAC CCGGGCTGGA GAAGGCAGGA GGTATGGCCC GGAAAAGAGA 000320 000321 CACAGAAAGG TAATCCAAGA GGGCTTTCTG GAGGAGGTGG CAGCTGAGCC TAGAGGTGAA TTTCGTTGGG GAAGAGGGAG 000400 000401 TGAGGCCTAG GCAGCTTAGG CCATGACCCC CATAGTGGGA GACGGCTGCA TAAGGGTCTC TCTCCTGGCA TCCGTCTTTA 000480 000481 CCCATGCCTG GGCATCCTAC CCCCATCACC CTTTAACCCC CGAGGGCCTT GGCTGGGTCC CAGAAATTCC CAGGAGGGTC 000560 000561 AGAGAAGACC ACGGGGACTC TCATCACCCC CACCCTGGCT CACTTCCAAA AAGGCTGCAA GAAGGATGTT GGAGGGTCTC 000640 000641 CTGGAGGCCG CCAAGGGCAT TTTCTCATGG AGCCCACGTC TCTCCCCGAT CGTGGTGGCT GTGATCGGTA ATTCCAGCTT 000720 000721 CATACTGGCT ACAGGTGGAT GATGCCCACC TGGCTGCCGA TGACTTCTGC ACCAAGTGAG GCTGGGTCTC TGGAGCTGCC 000800 000801 CCAGGGGCTG GACAAGCTGA CCCTGCCTGG AGCCAACCTG GAGATGCAGC CTGAGAACCT CAAGGAGGAC CTGGTCTACC 000880 000881 TGAAGAAGAA CCATGAGGAG GAAATGAACG CCCTTTGAGG TCAGGTGGAC AAGGATGTCA GTGTGAAGAT GGACACTGTG 000960 000961 CCTGGAGTGA ACCTGAGCTG CATCCTGAAT GAGATGCGTG ACCAGGACAA GAAACTGGTG GAGAAGAGCT GCAAGGATGC 001040 001041 CCAGGGCTGG TTCTTCAGCG TGGTGGGTGG CCGTGTGTAA GCAGGTGTGC ACACGTGTGG GCACATACGC CGTGTGCTGG 001120 001121 TGCAGTTGGA ACACCGGCAG ATTCACAGGC TGTCCCAGTT GGAAGGACTT TTGGAAACCA GTCGGACCAG CCCTTCATGT 001200 001201 CTTCGATGTA AAATGTGAGG CTCAGAGAGG ACTCAAGCTC ACACAGCCCT TCACTGTGGC CTGCAAAATA GATCCCGTTC 001280 001281 TCTGCAAGTC TGGTCTTGGG TTTCCACCAC AGCTGTTTAC AGGATGTGTG TATTTGAGTA CATACACATA CCCTTGGCAA 001360 001361 GCACAGGCTG AGTGTGTCCG GTGTCCTAGG GACAGCAACA GGTGCAAAAG AATAACACCC AGTGCCTGTC TTTGAGGTGC 001440 001441 TGTAGTTCGG TAGGAGTAAG AAATGCAAAC GACCGCAGAG CAGGTTGAAT TCCTCCAAGG TCCAACATGG GTGCAGAGAG 001520 001521 TCTTTGTGTG CAGGTGCTTT TGGGGCCCCA TAGAGGCCAG GGAGGGTTTA GGGGATGGTT CTGGGAGGCG AGGGCTCAGG 001600 001601 AACAGCCCCT TTCCTGTGCC CCACTTGTGA AAGTCTCCAT AAACCCCTGT GGCCCACTCT GCCTTCCAGA GAGAGGGGCT 001680 001681 GAACTGCAAG GTGGCCACCA ACACAGAGGC CCTGCAGAGC GGCAGGATGG AGATGTGGAG CTCTACATCT CTGTGCAGAA 001760 001761 CCTGAGCCGT CCCAGCTCAG CAAGAAAGCA TCGCTGGAGG GCAGCCTGGT GGAGACGGAG GTGTGTTACA GGACCCAGCT 001840 001841 GGCCCAGCTG CAGGGGCTCA TCAGAAGCAT GGAACAGCAG CTGTGCGAGC TCTGCTGTGA TGCAGAGCAC CAGGACCACG 001920 001921 AGCACCAGGT CCTTCTGGAC GTGAAGACGC GGCTGGAGCA GGAGATCGCC ACCTACAGCC GCTTGCTAGA GGTTGAGGAC 002000 002001 GCCCAGTGAG TGTGCACCCA GGAGGTGAAA CTGACGATGC AGGCTGGAGT CTGACTGAGG AGCCTTGACT GCCAAGTTAA 002080 002081 AGCGTCTGGA CTAGATCACG GGAACCTCCT CTGCCAGGGC CTGCTTCTCC CCAGCAGTGC TTGCAGGGGC CTGGGCTGGC 002160 002161 TGGCATCCCT GGGTCGATGG GTGCTCCTCT CCCTGCAGGC TGGCCACTCA GTACTCCTTG TCCCTGGCCT CGCAGCCCAC 002240 002241 CTGGGAAGCC ACAGTGACCA GCCACCAGGT GTGCCATCGT GGAGGAAGTC CAGGTTGGAG AGGTGGTCTT CTGTAAGCAG 002320 002321 GTCCATCTCT CCACCCACTG AGGCCCCTTT CTGCCTGTGA CAGCCCCACC TCGAGGGTCA TGGCACAGCC ATCAGCTGCA 002400 002401 GCTCCCAGCA TGCTACTGCC ACGCCCCGAG TGTCCGTCTG GGCACTGGTC CATGACCTGT TGTCTTTCTG TATCTACTTT 002480 002481 CTGCAGCCCC TCACTGAGGA GGCCTCCTGG GTTTGTCCAG TGCCTGCTAT TAAAGCTTTG CTCCAAGTTC AA |
Predicted Small Protein
Name | ENST00000444070.1_smProtein_422:703 |
Length | 94 |
Molecular weight | 10577.9047 |
Aromaticity | 0.0967741935484 |
Instability index | 46.952688172 |
Isoelectric point | 9.48724365234 |
Runs | 14 |
Runs residual | 0.0196136997212 |
Runs probability | 0.0347868877282 |
Amino acid sequence | MTPIVGDGCIRVSLLASVFTHAWASYPHHPLTPEGLGWVPEIPRRVREDHGDSHHPHPGS LPKRLQEGCWRVSWRPPRAFSHGAHVSPRSWWL |
Secondary structure | LLLEELLLLEEEEEHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLL LHHHHHLLLEEEEELLLLLLLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |