ENST00000444070.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000444070.1

Source

Gencode19

Same with

lnc-AL353997.5.1-1:3,NONHSAT146369

Classification

intergenic

Length

2552 nt

Genomic location

chr17+:18323282..18328411

Exon number

7

Exons

18323282..18323497,18323647..18324330,18325495..18326378,18326627..18326863,18326971..18327048,18327803..18327951,18328108..18328411

Genome context

Sequence
000001 TTGTTCTCAC TTAATACATG AGAACATGCA ATATTTGGCT GTTTCTGCGT TAATTCACGT AGGATAATGA CCTTCAGCTG 000080
000081 CATCTGTGTT GCTGCAAAGG ACATGATTTT GTTCTTTTTT ATGACTGCCT AGTACTTTGT GGTGTATATG CACCACATTT 000160
000161 TCTTTATTTA ATGAACCGTT GGTGGATACT TACCTTGGTT CCATGACCTT GCTGTTAAGT TGAACTAATT GACACCTACC 000240
000241 ACCGCTTGCT GGAGGTTGAG GACGCCCAGT GAGTGTGCAC CCGGGCTGGA GAAGGCAGGA GGTATGGCCC GGAAAAGAGA 000320
000321 CACAGAAAGG TAATCCAAGA GGGCTTTCTG GAGGAGGTGG CAGCTGAGCC TAGAGGTGAA TTTCGTTGGG GAAGAGGGAG 000400
000401 TGAGGCCTAG GCAGCTTAGG CCATGACCCC CATAGTGGGA GACGGCTGCA TAAGGGTCTC TCTCCTGGCA TCCGTCTTTA 000480
000481 CCCATGCCTG GGCATCCTAC CCCCATCACC CTTTAACCCC CGAGGGCCTT GGCTGGGTCC CAGAAATTCC CAGGAGGGTC 000560
000561 AGAGAAGACC ACGGGGACTC TCATCACCCC CACCCTGGCT CACTTCCAAA AAGGCTGCAA GAAGGATGTT GGAGGGTCTC 000640
000641 CTGGAGGCCG CCAAGGGCAT TTTCTCATGG AGCCCACGTC TCTCCCCGAT CGTGGTGGCT GTGATCGGTA ATTCCAGCTT 000720
000721 CATACTGGCT ACAGGTGGAT GATGCCCACC TGGCTGCCGA TGACTTCTGC ACCAAGTGAG GCTGGGTCTC TGGAGCTGCC 000800
000801 CCAGGGGCTG GACAAGCTGA CCCTGCCTGG AGCCAACCTG GAGATGCAGC CTGAGAACCT CAAGGAGGAC CTGGTCTACC 000880
000881 TGAAGAAGAA CCATGAGGAG GAAATGAACG CCCTTTGAGG TCAGGTGGAC AAGGATGTCA GTGTGAAGAT GGACACTGTG 000960
000961 CCTGGAGTGA ACCTGAGCTG CATCCTGAAT GAGATGCGTG ACCAGGACAA GAAACTGGTG GAGAAGAGCT GCAAGGATGC 001040
001041 CCAGGGCTGG TTCTTCAGCG TGGTGGGTGG CCGTGTGTAA GCAGGTGTGC ACACGTGTGG GCACATACGC CGTGTGCTGG 001120
001121 TGCAGTTGGA ACACCGGCAG ATTCACAGGC TGTCCCAGTT GGAAGGACTT TTGGAAACCA GTCGGACCAG CCCTTCATGT 001200
001201 CTTCGATGTA AAATGTGAGG CTCAGAGAGG ACTCAAGCTC ACACAGCCCT TCACTGTGGC CTGCAAAATA GATCCCGTTC 001280
001281 TCTGCAAGTC TGGTCTTGGG TTTCCACCAC AGCTGTTTAC AGGATGTGTG TATTTGAGTA CATACACATA CCCTTGGCAA 001360
001361 GCACAGGCTG AGTGTGTCCG GTGTCCTAGG GACAGCAACA GGTGCAAAAG AATAACACCC AGTGCCTGTC TTTGAGGTGC 001440
001441 TGTAGTTCGG TAGGAGTAAG AAATGCAAAC GACCGCAGAG CAGGTTGAAT TCCTCCAAGG TCCAACATGG GTGCAGAGAG 001520
001521 TCTTTGTGTG CAGGTGCTTT TGGGGCCCCA TAGAGGCCAG GGAGGGTTTA GGGGATGGTT CTGGGAGGCG AGGGCTCAGG 001600
001601 AACAGCCCCT TTCCTGTGCC CCACTTGTGA AAGTCTCCAT AAACCCCTGT GGCCCACTCT GCCTTCCAGA GAGAGGGGCT 001680
001681 GAACTGCAAG GTGGCCACCA ACACAGAGGC CCTGCAGAGC GGCAGGATGG AGATGTGGAG CTCTACATCT CTGTGCAGAA 001760
001761 CCTGAGCCGT CCCAGCTCAG CAAGAAAGCA TCGCTGGAGG GCAGCCTGGT GGAGACGGAG GTGTGTTACA GGACCCAGCT 001840
001841 GGCCCAGCTG CAGGGGCTCA TCAGAAGCAT GGAACAGCAG CTGTGCGAGC TCTGCTGTGA TGCAGAGCAC CAGGACCACG 001920
001921 AGCACCAGGT CCTTCTGGAC GTGAAGACGC GGCTGGAGCA GGAGATCGCC ACCTACAGCC GCTTGCTAGA GGTTGAGGAC 002000
002001 GCCCAGTGAG TGTGCACCCA GGAGGTGAAA CTGACGATGC AGGCTGGAGT CTGACTGAGG AGCCTTGACT GCCAAGTTAA 002080
002081 AGCGTCTGGA CTAGATCACG GGAACCTCCT CTGCCAGGGC CTGCTTCTCC CCAGCAGTGC TTGCAGGGGC CTGGGCTGGC 002160
002161 TGGCATCCCT GGGTCGATGG GTGCTCCTCT CCCTGCAGGC TGGCCACTCA GTACTCCTTG TCCCTGGCCT CGCAGCCCAC 002240
002241 CTGGGAAGCC ACAGTGACCA GCCACCAGGT GTGCCATCGT GGAGGAAGTC CAGGTTGGAG AGGTGGTCTT CTGTAAGCAG 002320
002321 GTCCATCTCT CCACCCACTG AGGCCCCTTT CTGCCTGTGA CAGCCCCACC TCGAGGGTCA TGGCACAGCC ATCAGCTGCA 002400
002401 GCTCCCAGCA TGCTACTGCC ACGCCCCGAG TGTCCGTCTG GGCACTGGTC CATGACCTGT TGTCTTTCTG TATCTACTTT 002480
002481 CTGCAGCCCC TCACTGAGGA GGCCTCCTGG GTTTGTCCAG TGCCTGCTAT TAAAGCTTTG CTCCAAGTTC AA
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Predicted Small Protein

Name ENST00000444070.1_smProtein_422:703
Length 94
Molecular weight 10577.9047
Aromaticity 0.0967741935484
Instability index 46.952688172
Isoelectric point 9.48724365234
Runs 14
Runs residual 0.0196136997212
Runs probability 0.0347868877282
Amino acid sequence MTPIVGDGCIRVSLLASVFTHAWASYPHHPLTPEGLGWVPEIPRRVREDHGDSHHPHPGS
LPKRLQEGCWRVSWRPPRAFSHGAHVSPRSWWL
Secondary structure LLLEELLLLEEEEEHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLL
LHHHHHLLLEEEEELLLLLLLLLLLLLLLLEEL
PRMN -
PiMo -