ENST00000443171.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000443171.1 |
Source |
Gencode19 |
Same with |
lnc-PXMP4-2:1,NONHSAT079407 |
Classification |
antisense |
Length |
642 nt |
Genomic location |
chr20-:32375181..32398903 |
Exon number |
4 |
Exons |
32375181..32375583,32383320..32383422,32385724..32385801,32398846..32398903 |
Genome context |
|
Sequence |
000001 AATGTAGTCT CCTTGGCCTG CGCTCTGTAG GAGTGGCAGA ACAGTAAGAG AAATGACAAA GCAAGAGGAA CCTAATACTC 000080
000081 TTCCTCATTG GCCTTCCTGT CTCCATCTTT ATTCCTTCCA GCTCATTCTC TACATGACAC TGTGAATGCC AAACTGTCTG 000160 000161 GAGGCTGCCA TGAGCGGCCA ATTTGTGATC TCTGCTTTAC CTGAATTATT TCCGTGAATT GTGACATCAA CCTCGCCAGA 000240 000241 TAAGAAAGAA GACTGAAGTT CAGAGAGGTG AAGGGACTGG CTCAGGGGCT ACCCCTATGG TTGCGGGAGC TAAGATTCCA 000320 000321 GCCCAGCAGC GTGATCCAGA GCCCATCTGA GCTACCCAGA TCTTCCTGCT GTTAAACCCG TCCTGGGGCA GCTCTTGCCT 000400 000401 GATGGGCTAC CTGAGGAACC CACAGGAAAT CAAGGGAGGT GCCTGCAAAG TTGCCGTGGG GTCACAGCCT GCCCTTTGGA 000480 000481 AGGGGCTGTT TCTGGGCTGC TGTGACTTCC TGCCATTATT TCCTCTCTGT TCTCCCTCTG GAATGAATAA AGTACTTCTG 000560 000561 AAAAACCATC AACCCAGTCG ATACGGAAAT GCTGGTCCCT ACAATAGAAT GCTCTGTGGT CATTAAAAAG ATTAAAAAGG 000640 000641 TC |
Predicted Small Protein
Name | ENST00000443171.1_smProtein_401:625 |
Length | 75 |
Molecular weight | 8052.4347 |
Aromaticity | 0.0945945945946 |
Instability index | 52.8662162162 |
Isoelectric point | 9.36505126953 |
Runs | 9 |
Runs residual | 0.0210283454186 |
Runs probability | 0.0214822665803 |
Amino acid sequence | MGYLRNPQEIKGGACKVAVGSQPALWKGLFLGCCDFLPLFPLCSPSGMNKVLLKNHQPSR YGNAGPYNRMLCGH |
Secondary structure | LLLLLLHHHHLLLEEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEELLLLLLL LLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |