ENST00000443171.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000443171.1

Source

Gencode19

Same with

lnc-PXMP4-2:1,NONHSAT079407

Classification

antisense

Length

642 nt

Genomic location

chr20-:32375181..32398903

Exon number

4

Exons

32375181..32375583,32383320..32383422,32385724..32385801,32398846..32398903

Genome context

Sequence
000001 AATGTAGTCT CCTTGGCCTG CGCTCTGTAG GAGTGGCAGA ACAGTAAGAG AAATGACAAA GCAAGAGGAA CCTAATACTC 000080
000081 TTCCTCATTG GCCTTCCTGT CTCCATCTTT ATTCCTTCCA GCTCATTCTC TACATGACAC TGTGAATGCC AAACTGTCTG 000160
000161 GAGGCTGCCA TGAGCGGCCA ATTTGTGATC TCTGCTTTAC CTGAATTATT TCCGTGAATT GTGACATCAA CCTCGCCAGA 000240
000241 TAAGAAAGAA GACTGAAGTT CAGAGAGGTG AAGGGACTGG CTCAGGGGCT ACCCCTATGG TTGCGGGAGC TAAGATTCCA 000320
000321 GCCCAGCAGC GTGATCCAGA GCCCATCTGA GCTACCCAGA TCTTCCTGCT GTTAAACCCG TCCTGGGGCA GCTCTTGCCT 000400
000401 GATGGGCTAC CTGAGGAACC CACAGGAAAT CAAGGGAGGT GCCTGCAAAG TTGCCGTGGG GTCACAGCCT GCCCTTTGGA 000480
000481 AGGGGCTGTT TCTGGGCTGC TGTGACTTCC TGCCATTATT TCCTCTCTGT TCTCCCTCTG GAATGAATAA AGTACTTCTG 000560
000561 AAAAACCATC AACCCAGTCG ATACGGAAAT GCTGGTCCCT ACAATAGAAT GCTCTGTGGT CATTAAAAAG ATTAAAAAGG 000640
000641 TC
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Predicted Small Protein

Name ENST00000443171.1_smProtein_401:625
Length 75
Molecular weight 8052.4347
Aromaticity 0.0945945945946
Instability index 52.8662162162
Isoelectric point 9.36505126953
Runs 9
Runs residual 0.0210283454186
Runs probability 0.0214822665803
Amino acid sequence MGYLRNPQEIKGGACKVAVGSQPALWKGLFLGCCDFLPLFPLCSPSGMNKVLLKNHQPSR
YGNAGPYNRMLCGH
Secondary structure LLLLLLHHHHLLLEEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEELLLLLLL
LLLLLLLLLLLLLL
PRMN -
PiMo -