ENST00000440088.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000440088.1 |
Source |
Gencode19 |
Same with |
lnc-TMEM60-1:3 |
Classification |
intergenic |
Length |
2029 nt |
Genomic location |
chr7-:77286977..77325582 |
Exon number |
2 |
Exons |
77286977..77288635,77325213..77325582 |
Genome context |
|
Sequence |
000001 TTCGGAGGTC AGAGCTCGGC GGGGTGCGGC TAGTGGCGGA GCGCGCTGCG AGGGGAGGGC TTTCCACTGT CGCTGGCGTG 000080
000081 AACTCGCGTG CCCGGTGGGT ATCAGGGAAG AACCCCCGCC CCGGACCCCC AGATCTGCCA TGGCCGAGGT AGCGATCGTC 000160 000161 TCTGCGGCCA CGAAGACTGT TTTAACTTGT ACCACTTTCC CTTCCATTTT TCCTGGGGTG CCTCTCACCC TGCATCTGCG 000240 000241 CGTTCAGCAA GCTGGATTTC GGGAATGCTC AGTTCAGAAG AGAAAAAATT GCCGGGAATC AAGTCCTTCT TTTTGTTAGT 000320 000321 CGGTAGTCGA TTGATGGGAA GTGTTCAAAA TCATTCGATG TGGTGACAAG GTATCACCAG TCTGTGGGTA CAAAAGGAGA 000400 000401 GTAACATGAA CGATTCAAAT TCCACTGGCT CTTGTTCCCA TGGATTCACA GAAGTTCAGC CCCATTTCAA AACTTCACAT 000480 000481 TTGCTTCTGG GAAGCCCATT CTGGAAAGTT TCTCTGTGGC CCTCTCCAGA AGGCAGCGCG ACTTCCACCC AGCAACACAA 000560 000561 GTCTCTGCAG CACCTGCCCC AGCAGCGCCA GCTGAGCCCC GGAAGCTGGG AAGGCTTAAG CTGACTCTTC TGCTGCACAT 000640 000641 AGCAAAAAAT GGTCATTTCT GTAGTTGCAG CTCCAGATCT ACAATAATCA ATCTATATCC ATATTTTATG GGGTTTTTTT 000720 000721 GAGACAAAGT CTTGCTCTGT TACTCAGGCT GGAGTGCAGT GGCATTATCA TCATTCACTT GTAGCCTTGA CCTCCCTGGC 000800 000801 TCAGGTGATC CTGTCACCTC AGCCTTCCAA GTAGCTGAGA CCACAGGCAT GCACCACTAA GCCTGGCTAA TTTTTCAATT 000880 000881 TTTATTTTTC GTAGAGACAG GGTCTCCCTG GGTTGCCCAA ACTGGTCTTG AATTCCTGGG CTCAAGCAAT CCTCCTGTCC 000960 000961 CGGCACCCCG AAGTGTTGGG ACTACAGGCA TGAGCCACTG TGCACAGCCC TTTTTGTTTT TGTTTTTGTT TTTTTTTAAA 001040 001041 GGTAATTTCC CAGTGGAATC CTCGAGATTT CTTCACGTTT TTGGAAAAAT GAGTTACATT TTAGATTGTT TTCCTTTTTG 001120 001121 GAATTTAATG GTATACATTA TATTACATAG CTATGTTGAG CTCTATTTCT ATTACACTAA AAAGTAGGCT AATTGTCTTA 001200 001201 ACTTTCATCA GTAATGACAT TAAATGTGTG AAGATTATAC TTGGAATAAA GCACTTGGAT TCATTCATTT CTTCAGTAAA 001280 001281 TATTTATTGA GCACTAGTAT GTTCCAACGA GTGTCTGTCT ACATTCTGGG GACAAGTGAT AACTAAATCC CTGTCCTCGT 001360 001361 GGAGAGTTAA CAATCAACAA ACTAACAAAC ATTTAATTTA TGTCATCAAC TCATTTCCAC AAATATAACA ACATCTTGAC 001440 001441 TTCAAGTTTC CTGAGTTTCT GGTCTAAAGA ATTGCTACCT TCAAGAGCTC AAATCATTTG TTGGGGAGAG AGGCCTGTGA 001520 001521 TATATTTTCT CCTTTACAAT GAAAGTAGCT GTAAAAAGAG GAAGAGAAAT TCTGAGGGTA AAGATAAAAA ATGTTGAAAT 001600 001601 CTTCTTTCTG GATTTCAGAT TGAGTCTCTT GCCCTAATTG ATGCAATTTA CACTCCATGC ATCTCCTTCC CTGGACCTTC 001680 001681 TCCAGTTCTT GGGGACTACA GATGAACTTA CTTTTAATGC ATTTTATGGC ATTTGGAGGC CCTCCAGTGG ACAAATACTA 001760 001761 TACCTGAAAA AAATCCTTTT GCTGTGCTAA AGTGTTCAGG TGTGAAGTGT ACTCATGTTT GCAAATCACT TTGAAATATA 001840 001841 TAAACAAAAA TGAATTAATG GATGAATAGA GTGATGCATA GATCATTAGA CATGTGATAA AAATAACTGT TAATTGTAGA 001920 001921 ATCTAGATGA TGAGTATATT ATATGATATG GCCCACTGTA TAATTCTTTC AACTTTTCTG TTTGAATGTT TGATAATAAA 002000 002001 ATATTGAATA AAAATCTTTT TGCTAAAGA |
Predicted Small Protein
Name | ENST00000440088.1_smProtein_989:1186 |
Length | 66 |
Molecular weight | 8013.4405 |
Aromaticity | 0.292307692308 |
Instability index | 58.7786153846 |
Isoelectric point | 8.64141845703 |
Runs | 10 |
Runs residual | 0.00355769230769 |
Runs probability | 0.0553259141495 |
Amino acid sequence | MSHCAQPFLFLFLFFFKGNFPVESSRFLHVFGKMSYILDCFPFWNLMVYIILHSYVELYF YYTKK |
Secondary structure | LLLLLLHHHHHHHHHHLLLLLLLLLEEEEEELLEEEEELLLHHHHHHHHHHHHHHHEEEE EEEEL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLL LLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooo ooooo |