ENST00000437712.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000437712.1

Source

Gencode19

Same with

lnc-RGS3-1:1,NONHSAT134356

Classification

intergenic

Length

3043 nt

Genomic location

chr9+:116381508..116384914

Exon number

2

Exons

116381508..116381691,116382056..116384914

Genome context

Sequence
000001 CTGTGGGCCA GAGGAGAGCA CTGGGTACCA GAATCACAGA TCAGGAGCTG TGGAAGGCGC TGCCCGACAG GATGGGGGAC 000080
000081 CCTGGGAGAG GGATGCAGCC ACATCCAAAC TGTGGCCCAG AAGAGGGAGT GGGAAAAGTC CTCGACCTCT CTGTCTTCCT 000160
000161 GCTGTCTTCC AATATCCTAC CTGGAAAGCA ACGGGTCTGA AAGGTAATTC TGTTCTTGAT GAGGGTGCAG GCAGCAGAGG 000240
000241 GAATTGTCAT CCTGCTGAAG ACACACAGCT CTTCCATGCT CTACCCTATG TGTAATTTGT TCTTATCTGC TCCTGGAGCC 000320
000321 ACCACCTGCT ACAGTGTAAA GAGACCCCAC AGACTCTCTG GATCAAACTA CTCACTGTCC AGAAGGAGAA AATGAGGTCC 000400
000401 TATGTCTGTG GCTAGAACCC AGGCCTCTGG GGAGCAACCC AGGGCTCCAT CCAGGGTGAC CTGAGCCTGC TCTGCTCATC 000480
000481 AGAGCCAGTC TTTACCACCC TTCATATCCC GGGAGCCCAC AGGTAGAAAG ATGGGCATTG CAGGTCACCG TGGTTCCCCC 000560
000561 ACTGAAGCAA GTTCCCTGGC TCGCGATTAG CCAGTGCTCT GCTGGTTCAT GATGCGCTCC AAATGCTAGA CCAAGAAAGA 000640
000641 AACTGGGTCG GTGGGCAGGA CACAGGACCA GCGCTCTGGG AGGAGAGCTG TTCTCAAGCA GTTTGGTGGC ATCAGAGCCT 000720
000721 CTGTGTGGTC AGTCAAGCAG GGCAGCCAAT TTCCTCTCCT TTCAGCCCTA ACTCTGGACT CCTGTACCTG GAGGGGCTCC 000800
000801 CTTTGTGCTC CTGCAGCCCA GAAGCCCTCC GAGGCTTGAC ATGAAAGAGT CGCGGGATCT TGGACTGTTC CGGTGGAAGG 000880
000881 GCTCCTAGCA AAACCCAGAT GTTTTCTCTT CTTGTATGGA TGGGAGGACC GAAGTCCAGA GAAGTGGAAT AACTTGCCCA 000960
000961 GGGTTGTGCT GAGATTTGTG AAGGTGCCGG ATGCTGGTGT GCTGGTGGCT GGCATGCTCT GAGCCCTTCC TTCCCGCTGT 001040
001041 TTCCCTGGAG TTCTGCTTGG CAACCACCCG CCTGCATTTT TGCAAAGTGA TGTCATCTGC AGATAATGGT TTTTCCGTTC 001120
001121 CTGGTGGAGC AGGAGTTCCA GATACAGTGC TTCGGGGGAG GGGCTCAAGA GAGCTGATTG TGCACTCCTC AGGCAAGTGG 001200
001201 GGGCTGCATA GACCCCCTCC CCTCTGACAG TCACATCTCA GTTGTAAGGC AAGGCACCGT CTCAGGCTTC CTGGACTCCG 001280
001281 GAACCTGGAA TGACCAAAAT GGCAGAGGCC CCAGAGACAA GCCTCCCCTG CCTCCTCCTT GTAGAGTTGG GAATCTGAGG 001360
001361 CCCAGAGAGG GCAGAGCCTT GCCCAAGCTC ACACAGCATT TACAGGCAAA ACCTTGACTC ACATCCCGAC TCCTAACATC 001440
001441 TGTGGCCACT TGCCCGTGGT TGGGGGTTTT TCACCCTCAA CACCGTTGAC ATTTTGGGCC AAGGAGTTTT GTTGTGGGGG 001520
001521 CAGTCCCTTT CATGGCAGGA TGTTTGGCAG CATCCCTGGC CTCGACCTCC TACAGGCCAG TAGCACCCCT CTCCAGTTCT 001600
001601 CAAATCCAGA CACTGCCAAA TGTCTTTCAC CTAAGTTGGG GTGGGAGAAA GTAACCCTCC AGCTCCTAAG ACCTTTATCC 001680
001681 ACTGCCATAG GCAGGAGAGG TTTCTTGAGT CCAAGCCCAA AGGGTGCTTT GTCTGAGGCT CTGACTTAAC GTCAGGCACC 001760
001761 TTCAGGATGG GAGGCAGGCC TGGAGGGGGC TATGAGGGGC TGGAGATGGT CCAGGCCCTC CTTCTGGTTA GGAACACTGC 001840
001841 TTCCTCTGAT CACTTTTCTT GGAGCAAAAC TGCCGATTTA TTTTCCTGGG GAAATAAAAA TAAATGCTGG CTGTTGTAAT 001920
001921 CTCATCCCTG ATCCCATCTG GAAAAAGCAG GCTCATGAAT CTTGGCCGCC TGAGCTCTGA GGACTGTGTC TGGCGGAACC 002000
002001 TGGAGTTACA ATGGGCCTTC GAACATCGGA ACAGTCACGG CTGACATTTC CTTTCCCGTT ACATGGCTCC TTGGAATGTG 002080
002081 AGCCCCAGGG GGCCGTCCGT GGGCAGGCGG AATTTGGTGG AAAGAAGTGC TGCACGGGCC GGAGGCCAGC TCAGCTTCTG 002160
002161 ACTTGCTGTG TGACTTTGGG CCACTTTTCT GTTCGTTTCT GGGCCTTGAT TTCTCCATCT GCAGAATGAG GGGAGCCACG 002240
002241 TTCCTCAACA AGGGGTCCAT GGACCACCTT GTATCAGAAC CATTTAGGGA ATGTGTTTAT GGCTATTCCT GATATTTCTG 002320
002321 ATTCCTCTTC CAGACCTCCT AAAGTTTTTA TGCATCTCTA AGTGATTTCG ATATATATAA GTTTTGGGAC CCACAACACC 002400
002401 AAGGACTTTG AACTTTCCAC CCAGTTTCAA GTTTGAACAC ATCACAGTTC TTCAGCCTCC TTCCCCCTCA TAACGAAGTG 002480
002481 TAGAGTTATG AAGCTAGAGG GTAAAATTAT GGGGTGGGCT GGAACTGGGC ATTGCTCCTA ACAATTATCT GCTTTCAAAC 002560
002561 TCTTGGCAGG GTCTCTGGGG TCCTTGATCC AACTGAAATC ACTGTTAAAG CACTTTATTC CTCCAGTAAT GAAACTCGAG 002640
002641 CTGCTAGTTA CAGAGTTTGG TTTCAAAATT GTGCCATTTA TTATTTTTGT TGGATTGGCT TATAAACCCT CATATAGTCA 002720
002721 TACATCATTT ATAATGCATT ATTCCATGAG AATGCATTTT CCAGATGAGA TTTATTTTTT CTGTTAAAAA CTTAAAACTG 002800
002801 TTCTTTTTTT TTTTTTAAAT GGCAGTCTTT CGCCATGTGT TACCTATTTA TACCACCTTA AGTGAAGGTC AGGAAATGCA 002880
002881 ATTTTACTTA TTCTCAATGC TCCAGGGTTG TCATTGTGAG TTTTAACTAC TGTATGCATT GATGTAAATT TTAGGGACTC 002960
002961 CAAAACTCAC TGTGCCTGAA CTATGAATGT CCCCCAAGCT GCTTAGCCCT TGTGTCTGCT TTTAAAAGTT CTGCTTTGCT 003040
003041 TCT
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Predicted Small Protein

Name ENST00000437712.1_smProtein_218:394
Length 59
Molecular weight 6485.5705
Aromaticity 0.0689655172414
Instability index 48.3
Isoelectric point 10.608581543
Runs 11
Runs residual 0.0330617658204
Runs probability 0.0462093109152
Amino acid sequence MRVQAAEGIVILLKTHSSSMLYPMCNLFLSAPGATTCYSVKRPHRLSGSNYSLSRRRK
Secondary structure LLLHHHHLEEEEEELLLLLLLHHHHHHHHLLLLLLEEEEELLLLLLLLLLLLLLEEEL
PRMN -
PiMo -