ENST00000435452.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000435452.2 |
Source |
Gencode19 |
Same with |
lnc-SPAM1-4:2,NONHSAT123090 |
Classification |
antisense |
Length |
2147 nt |
Genomic location |
chr7+:124569952..124819369 |
Exon number |
6 |
Exons |
124569952..124570070,124580334..124580439,124660387..124660467,124778627..124778713,124793540..124793621,124817698..124819369 |
Genome context |
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Sequence |
000001 ATAGTCGCTT GTTCTCCGCC CGCGGTGGAC CAGCTGCGTA ACGGTTCACA CACTGATGGC GCCTGGAGGT TTGGCGAAAT 000080
000081 ACTGACAGGA TGCGACGTCA ACGGGAGCGC AGGGCCAAGA TACCCTTTAT ATCAAACCGT CTATCCTGGA GCAGAAAAAT 000160 000161 CCTGTCTTCA TTGCTATAGC TACAGATTCA GAAATGAGCA TGTAACAAAT TCAGGCCAAA GAGAGGCAAT GGAAATCAGA 000240 000241 GAAACACTGT TCCTGAAAGC TTCTGTCACT CAAGAATCCA TGAAACATTC ATGAACTTCA CATCAGATTT TAATGCAACT 000320 000321 TGTTACACAA GATGAACCCA AACATATTTG ACTTTTTATT TTCAGAAAAG CTTAATACAT AGTTTTGAAT ATGAAATAAA 000400 000401 ATCCAGTGAG ATTCAACAAA TTGTCAAGTT ACACACTTCT GAATGACAGA TTTGGGACCA GAAGCTAGAC CTCAGGTTGT 000480 000481 CTTTGCAAAT GACACAATCC TGTATCTAGA AAACTCCATT GTATCAGCCC AAAAGCTTCT TAAGCAACTT CAGCAAAGTC 000560 000561 TCAGGATACA AAATCAATGT GGAAAATCGC AGGCATTGCT GTACACCAAC AACAGACAAG CAGAGAGCCA AATCATGAAT 000640 000641 GAACTCCCAT TCACAATTAC TGCAAAGAGA GTAAGATACC TAGGAATACA GCTAGCAAGG GAAGTGAAGG ACCTCTTCAA 000720 000721 GGAGAACTAC AAACTACTGC TTAGGAAAAT CAGAGAGGAC ACAAACAAAT GGAAAAAAAT TCCATGCTCA TGGATAGGAA 000800 000801 GAATCAATAT CATAAAAATG GCCATACTGA CCAAAGTAAT TTATAGATTC AATGCTATTC CCATAAAATT ACTGATGCTT 000880 000881 AGCACTTTTG AGTGACTAGA CCAACTAGCT TCATTAAACA TGATGTTTTT TGAAAACATA TTAAGTGTGA GCATTACTAG 000960 000961 CAACATAGTG GTAGAAAAGA AAATTGAACC AATGAATGGC TAATACTGAC ATATTCAGTA GTAACAATAA AACAATAAAA 001040 001041 GTGACTCTAT TTTAGCCCTT TGTTTTGCAG TGGAAAACAC TGAAGTTGTG GCATATGAAA AAGGTGCTTT TCAATTGCGA 001120 001121 CAAAAGCAAA AATTGACAAA TGGGATCTAA TTAAACTAAA TAGCTTCTGC ACAGCAAAAG AAACTATCAA CTGAGTAAAC 001200 001201 AGACAACTTA CAGAATGGGA GATAATTTTT GCAAACTATA TGTGTGACAA AGGTCTAATA TCCAGCAGCT ATAAGGAACT 001280 001281 TAAACAAATT TACAAGAAAA AAGCAACCCC TAAAAATGTG GGCAAAGGAC ATGAACAGAT ACTTTTCAAA ATAGACATAC 001360 001361 ATGTGGCCAA AAATCATATG AAAAAGAGCT CAATATCACT GATCATTAGA GAAATGTAAA TTAAAACTGC AATGAGACAT 001440 001441 CATCTCACAC CAGTCAGAAT GGCTATTATT AAAAAGTTAA AAAATAATAG GTGCTGGCAA GTTGTTGAGA AAGAGGAATG 001520 001521 CTTATTCATC ATTGGTGGGA GTGTAAATTA GTTTAGTCAT TGTGGAAGAC AGTGTGGCAA TTCCTCAAAG ACCTAAAGAC 001600 001601 AGAAATACCA TTTGACCCAG CAGTCTTATT ACTGGGTATA TACCTAAAGG AATACAATCA TTCTATTATA AAGACACATG 001680 001681 CCACATATAT GTTCCTTGCA GCACTATACA CAATAGCAAA GTTATGGAAT CAACCTAAAT GTCCATCAAT GACAGACTAG 001760 001761 ATAAAGAAAA TGTGGTACAT ATACACCATG GAATACTATG CAGCCATTAA GAACAAGATT ATGTCCTGTG CCAAGATATG 001840 001841 GATGGAACTG GGGGACATTA ATCTTAGAAA ACTAACACAG AAAAAGAAAA CCAAATACTG CATGTTCTCA TAAGTGGGAG 001920 001921 CTAAATCATG AGAACACATG GACACATAGA GGGGAGTAAC ACACATTAGG TCCTTTTGGA GGGTGGAAGT TAGGAGCAGG 002000 002001 GAGAGGGTCA GGAAAAATAA CTAATGGGTA CTAGCTTAAT ACCTCAGTGA TTAAATAATC TGTACAACAA AACCCCGTGA 002080 002081 CACGAGTTAA CCTATGTAAC AAACCTGCAT TTGTACCCCT AAACTTAAAA TAAAAGTTAA AAAAGGT |
Predicted Small Protein
Name | ENST00000435452.2_smProtein_1769:1912 |
Length | 48 |
Molecular weight | 5779.9667 |
Aromaticity | 0.170212765957 |
Instability index | 44.2106382979 |
Isoelectric point | 9.55523681641 |
Runs | 8 |
Runs residual | 0.00393617021277 |
Runs probability | 0.012519872814 |
Amino acid sequence | MWYIYTMEYYAAIKNKIMSCAKIWMELGDINLRKLTQKKKTKYCMFS |
Secondary structure | LEEEEHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHLLLEEELL |
PRMN | - |
PiMo | - |