ENST00000435452.2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000435452.2

Source

Gencode19

Same with

lnc-SPAM1-4:2,NONHSAT123090

Classification

antisense

Length

2147 nt

Genomic location

chr7+:124569952..124819369

Exon number

6

Exons

124569952..124570070,124580334..124580439,124660387..124660467,124778627..124778713,124793540..124793621,124817698..124819369

Genome context

Sequence
000001 ATAGTCGCTT GTTCTCCGCC CGCGGTGGAC CAGCTGCGTA ACGGTTCACA CACTGATGGC GCCTGGAGGT TTGGCGAAAT 000080
000081 ACTGACAGGA TGCGACGTCA ACGGGAGCGC AGGGCCAAGA TACCCTTTAT ATCAAACCGT CTATCCTGGA GCAGAAAAAT 000160
000161 CCTGTCTTCA TTGCTATAGC TACAGATTCA GAAATGAGCA TGTAACAAAT TCAGGCCAAA GAGAGGCAAT GGAAATCAGA 000240
000241 GAAACACTGT TCCTGAAAGC TTCTGTCACT CAAGAATCCA TGAAACATTC ATGAACTTCA CATCAGATTT TAATGCAACT 000320
000321 TGTTACACAA GATGAACCCA AACATATTTG ACTTTTTATT TTCAGAAAAG CTTAATACAT AGTTTTGAAT ATGAAATAAA 000400
000401 ATCCAGTGAG ATTCAACAAA TTGTCAAGTT ACACACTTCT GAATGACAGA TTTGGGACCA GAAGCTAGAC CTCAGGTTGT 000480
000481 CTTTGCAAAT GACACAATCC TGTATCTAGA AAACTCCATT GTATCAGCCC AAAAGCTTCT TAAGCAACTT CAGCAAAGTC 000560
000561 TCAGGATACA AAATCAATGT GGAAAATCGC AGGCATTGCT GTACACCAAC AACAGACAAG CAGAGAGCCA AATCATGAAT 000640
000641 GAACTCCCAT TCACAATTAC TGCAAAGAGA GTAAGATACC TAGGAATACA GCTAGCAAGG GAAGTGAAGG ACCTCTTCAA 000720
000721 GGAGAACTAC AAACTACTGC TTAGGAAAAT CAGAGAGGAC ACAAACAAAT GGAAAAAAAT TCCATGCTCA TGGATAGGAA 000800
000801 GAATCAATAT CATAAAAATG GCCATACTGA CCAAAGTAAT TTATAGATTC AATGCTATTC CCATAAAATT ACTGATGCTT 000880
000881 AGCACTTTTG AGTGACTAGA CCAACTAGCT TCATTAAACA TGATGTTTTT TGAAAACATA TTAAGTGTGA GCATTACTAG 000960
000961 CAACATAGTG GTAGAAAAGA AAATTGAACC AATGAATGGC TAATACTGAC ATATTCAGTA GTAACAATAA AACAATAAAA 001040
001041 GTGACTCTAT TTTAGCCCTT TGTTTTGCAG TGGAAAACAC TGAAGTTGTG GCATATGAAA AAGGTGCTTT TCAATTGCGA 001120
001121 CAAAAGCAAA AATTGACAAA TGGGATCTAA TTAAACTAAA TAGCTTCTGC ACAGCAAAAG AAACTATCAA CTGAGTAAAC 001200
001201 AGACAACTTA CAGAATGGGA GATAATTTTT GCAAACTATA TGTGTGACAA AGGTCTAATA TCCAGCAGCT ATAAGGAACT 001280
001281 TAAACAAATT TACAAGAAAA AAGCAACCCC TAAAAATGTG GGCAAAGGAC ATGAACAGAT ACTTTTCAAA ATAGACATAC 001360
001361 ATGTGGCCAA AAATCATATG AAAAAGAGCT CAATATCACT GATCATTAGA GAAATGTAAA TTAAAACTGC AATGAGACAT 001440
001441 CATCTCACAC CAGTCAGAAT GGCTATTATT AAAAAGTTAA AAAATAATAG GTGCTGGCAA GTTGTTGAGA AAGAGGAATG 001520
001521 CTTATTCATC ATTGGTGGGA GTGTAAATTA GTTTAGTCAT TGTGGAAGAC AGTGTGGCAA TTCCTCAAAG ACCTAAAGAC 001600
001601 AGAAATACCA TTTGACCCAG CAGTCTTATT ACTGGGTATA TACCTAAAGG AATACAATCA TTCTATTATA AAGACACATG 001680
001681 CCACATATAT GTTCCTTGCA GCACTATACA CAATAGCAAA GTTATGGAAT CAACCTAAAT GTCCATCAAT GACAGACTAG 001760
001761 ATAAAGAAAA TGTGGTACAT ATACACCATG GAATACTATG CAGCCATTAA GAACAAGATT ATGTCCTGTG CCAAGATATG 001840
001841 GATGGAACTG GGGGACATTA ATCTTAGAAA ACTAACACAG AAAAAGAAAA CCAAATACTG CATGTTCTCA TAAGTGGGAG 001920
001921 CTAAATCATG AGAACACATG GACACATAGA GGGGAGTAAC ACACATTAGG TCCTTTTGGA GGGTGGAAGT TAGGAGCAGG 002000
002001 GAGAGGGTCA GGAAAAATAA CTAATGGGTA CTAGCTTAAT ACCTCAGTGA TTAAATAATC TGTACAACAA AACCCCGTGA 002080
002081 CACGAGTTAA CCTATGTAAC AAACCTGCAT TTGTACCCCT AAACTTAAAA TAAAAGTTAA AAAAGGT
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Predicted Small Protein

Name ENST00000435452.2_smProtein_1769:1912
Length 48
Molecular weight 5779.9667
Aromaticity 0.170212765957
Instability index 44.2106382979
Isoelectric point 9.55523681641
Runs 8
Runs residual 0.00393617021277
Runs probability 0.012519872814
Amino acid sequence MWYIYTMEYYAAIKNKIMSCAKIWMELGDINLRKLTQKKKTKYCMFS
Secondary structure LEEEEHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHLLLEEELL
PRMN -
PiMo -