ENST00000434657.1

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000434657.1

Source

Gencode19

Same with

lnc-OR2H2-2:1

Classification

intergenic

Length

2777 nt

Genomic location

chr6+:29497197..29501345

Exon number

3

Exons

29497197..29497361,29497726..29497820,29498829..29501345

Genome context

Sequence
000001 ACTGCCCAGC CTGATGGCTC CACATCTCAG GAGTAGGCTC TGATTCCTTG GGGCCCCAGG AGCCTCTCAG GAGTCTACAT 000080
000081 CCCAAGATGT TCTAACTTCC AGAGTCTCCA AGCCCATCAA GAGCAAGTTT TGCTAAAAGT GTTCTGAGAG CTTATGAAGC 000160
000161 ACATGGACAA GGAAGGGTTG TGCATCCGGC TTTCCACCTT AAACTGGTTT CTATGGTGCT TCATCGATGA GATAAGGATG 000240
000241 CATAGGAGAC CCCAGGCCAG GAGTTCCTTC AGGACACACT GTCCTAGGCC TGGGCCCTGG AGGAGGACAT GGTGATGAGG 000320
000321 CACCCTGAGG CCTCCATGGG GGAACTGAGA AGCATGCACT GTGACCTGCA CACCCAGGTG GGCTTCAGCA CCAAGTCTCC 000400
000401 TCCTGTGTCA CCCTGCGGGG CAGTAAATAG TGGGAAGTGC CCAGACCTCA CCAGCCCTGC TCCCTGGGCC TTCCTCCAGC 000480
000481 CCCTCCTCTC CCTCCTCCTC TAAGAAGCTT CTGAAACCAG GCTGCCTGAG CCTAGGGCAA AAGCTGACCT TGGGTTTACT 000560
000561 GGACATGCCT CAGAGACAAT GAGACGTGAG CAAGACTCTT CCAAGCCCCT CCCCTGTACC CTCCTGCTCT CACTCCTGAA 000640
000641 AGCCCCAGAA GGACACTGGA GGGGTCAGAT CCATCTGTGC AAGCCCACAA CCACACCTGT GAGTACCAGC AGCCCTGGAG 000720
000721 AGCAGCAGGG GGCCTTCACT CCTGAGCACC CCTCCAAGGG CCTAAAATCA GTGTCAGAGA CCCTAAGAGA ATCTAGGGAG 000800
000801 AGGGCATAGG TGAAACCCTG GCCCAGAGCC AGAATTGATT GCTCAGCTGA GTGTGGGAAC AGTCCAGCCC TGGCATGGAG 000880
000881 ATCCCCCAGA GGAGTGGAGG GTGTCTCATC CACTGTGGAG ATAAGCCCCC ATATTGCGTG GCAAAGGGGC TAGGTAACAG 000960
000961 TTAAGGCCTC ATCCATCTGA GCTCTGAATC AAGGCTAAAG CCCAGGCTAA GCAGCCCTGG GGCAAGAGTG TGAGGCAGGA 001040
001041 AGACTGAGTC AGCCTGAACC CTGGGGGCTG TCCCTGGAGT GACTTGAGCT TCCCTGACAG CTTCCCCACT CTAGGCTGCA 001120
001121 CACACACCTC GCTCTGGGAG TAGCAGCCTG CAGGAGTGTC CTCAGCATTA GACCAGGGGG ACCACACGGG GACCCTGAGG 001200
001201 ACTGCAGGGA CCCAGGTCTG TGGGGTCCAG CCTGGCAAAA GCAAGATGTT CTCAATGGAA AAGCTGACCA AATCTGCTTT 001280
001281 CCTTTCAGCC AAACCTGAGC AAGCACCCCC ACCACCCAGG CCTCTGCAGA TATCCCCCAG CATTGAGACC CTCCCCAAGG 001360
001361 GGATGGGCTG CTTCTCCCTG GCCCACAGCC CAGCTCCAGC AGCCCATGGG TATAGCCCTC CTGAAACAGG AGCCTCATCC 001440
001441 TCCCTCACCC TCACCTGGCT ATGCTGTACC CAAGGCCAAA GCCCAGAGGC ATAAGGGAGC TTCTGCAGAG CCCAGGACAG 001520
001521 CAGGCTGCTC TCTGGGGGCC CTGGGGACTC AGAGTGTGGC CAGCCCATCC CCAGCTCAGG ATAGACCACA GAGTGCTTGG 001600
001601 TGATTCCTGC ATTGGAACTC CCTCTCTAAG CTCCCCATGG ACCTGGACCT CAGAGGCCTG TGGTTTTCAC AGTAGAGCTT 001680
001681 GGAGCAGAGA TGCTAGGCCC CTATCACTTC CATATGTGTC CTGGACACCT CTAAGATCAT AGGACTGGCC TAGCCCCCAA 001760
001761 TACCAGACAC TGCCCAGCCC CCTGATAGCC CAGAGGTAGG GCCAGAGACA ACTCTCCTGC ATGTGATGCC TACAGCTGAT 001840
001841 CACTCTTGGC AGACAGTGAA CATCACGGCC CAGAAGGAGC CAGGGCAGCA CTTGGCAAGC TGCCCCAAAG CCCCAGAGAG 001920
001921 CTCCTTAGAC ATGGAAAGTC AATACTGATG GGGAAGCTGG ACACTTGGAG GCCACTGGAG GGAGGGGTGA GCATGGTGTC 002000
002001 CCCACAGCCC AGGCCACCCA GCAGCATGCC CTGCATCCAT GGTCCCAACC TGTAGGGCAG AACCCCCCTC TCAACGCACA 002080
002081 ATTCCTAGAC CCAGAGGGCC CTAGCCCAGA CTCAACCTGA GCCCTGAAAG GGAAGGGGCA CCAGGGGTGC CTTGGGGCCT 002160
002161 CCAGCAGCAG CCAAGATACA CAGGAGATGG AGCCCCCTGT GGCCCTGGCC AGAACTAGTA TTTGGCTTAA GGCGGAGCAA 002240
002241 GCCCCCTTGG AGCACTGCGT ACATACCCGG GGCCTATGTG TGCCTGGCAA GGCCAAGCTG ATGATGTTAC CAAGCTCAAA 002320
002321 CTACCACTGG CCACCTTGGT GAGGGTGGGG CAGAAACACG TGGACCAGCC ACCAACCTCA TCCATTCAAG GAAGCAGAAA 002400
002401 TGGTCAGGCT CCTGCAGGAT AAGTGGCCAC CACCAGACCA CCAATGGGGC AGAGTTCTGA GGCCCAAGCA GATGGCACTG 002480
002481 GGGCCCTGCT TCCAGGGTCC ACAATCTGCT CCAGGACACA AGACTGAAGA AAACTAAGCA AATGAGAGTC CAGGAGGCTG 002560
002561 GATCCCTCAT CTGCCATTCT TGGCAGTTGC ATTTTGTGGT CAGAAAAAGT CAGGAAACTT GGCTCTACTC ACTGCAGGAG 002640
002641 GCTCCAAGGT GGGACCAGAG CTTCCAGCAT AGATTCAACA ATGCCTAAGA ATGCCTCTTC TTGGGGAAAA GGACCCCTTC 002720
002721 CTTGGCCTCA AAGCCCCCAC TTATTTTGAT TAAAGCACAA TAAAGTCTTT GTTGTTA
[back to top]

Predicted Small Protein

Name ENST00000434657.1_smProtein_1460:1741
Length 94
Molecular weight 10585.015
Aromaticity 0.10752688172
Instability index 59.7569892473
Isoelectric point 10.7290649414
Runs 14
Runs residual 0.0196136997212
Runs probability 0.030850177909
Amino acid sequence MLYPRPKPRGIRELLQSPGQQAALWGPWGLRVWPAHPQLRIDHRVLGDSCIGTPSLSSPW
TWTSEACGFHSRAWSRDARPLSLPYVSWTPLRS
Secondary structure LLLLLLLLHHHHHHHLLLHHHHEEELLLLLEEELLLLLLEELLEELLLLLLLLLLLLLLL
LLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -