ENST00000434547.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000434547.1

Source

Gencode19

Same with

lnc-FARP1-1:1

Classification

intergenic

Length

1278 nt

Genomic location

chr13+:99229498..99231084

Exon number

2

Exons

99229498..99229548,99229858..99231084

Genome context

Sequence
000001 GCGGGAGCCC TAGGCCGCAG CCGCCGCCTG TCGGCCCGGC CCGGGTCCCA GCTGCTTCGG TGTCTGGGTG AAGTTTCCAG 000080
000081 CCAACCCAAG AAGGAAACCG AAAGGGAAGA GGCCGAGAGA GAGGTTAATT CCTAGTGCTT TGGTTACCGA AAACAGCCCG 000160
000161 GCTGGGACTG CTGGGCTGGG AACTTAGCTA AGCAGTGCGG AGGCTGAACC CCACCATCTC TGGGATCCGC AGCAAATCAG 000240
000241 AAGCCCCCAC CCACGATAAG GGGAAAATGG GGCGCAGAGG GCAGGGAGGA AGGGAAGAGA ATGGAAGGAA AGCGCGTCTG 000320
000321 GACTTTGAAC TGCAGCCCTC TCCCTCTTTC CCTTGCCTCG GAAGCTCCAG GCCCACTCAG CACCAGTTCT GTCTCCTCTT 000400
000401 TTCAGCCGCC TTCTCTCTAG CTACTGAGGG GAAAAGTCAG GATGAAGCGG GTCCCTCGGC CTCCAGAAGG TGTTTTATTA 000480
000481 CAGTCGCAAA CAGGTAGAGC GGCAGCCACC CCAGTGATGA CTCCCTGCTC CTTAGATTGT AGGGACGCTG GCACCTCACT 000560
000561 CATGCTCCTA AGTGGCCATT TTGCGCCCTG GCTGGGCGAG TTAGGCAGAC AAAATGAGCC CCCAAAAGTT TAAAGGCCTC 000640
000641 CACCAAAGGA GTATTTCTTT TCTGAGGTGT CATTGTATTC CATCCACGAA CTTCAGTTCC CCCGGGTGCT CTGGATCTGA 000720
000721 CATGGAGTAG GATGCTAACA TCTAATCCCT TCTTTCCCTT TGGAAAGATG CATGTTTTTT CTCGGAGTCC TAGGGAATAC 000800
000801 CTTAGAATAC TTTCATGGTT GTCATTGGTA CACCCATCCC TTGAGGAGCC CTGCCACCCG TAAGTAGGAC TGCAAGGAAA 000880
000881 TACAAAATTA AGAGAAGTAT GAACCCTGAT ACCCAGGAAC TTAAAATCAG GTGTATAAAT TTTGTACACC TAAAAAATAT 000960
000961 GGTACCTAAA GAGGCGAACA GCAAAACAAG CAAGAATGTG AATCTTTAAA ATGTTTCTAT TCTTCAGCGC AGCCCAGGAA 001040
001041 TTCTACCTAA AGTAACATAT CCTAAGGCAA CAACCAAGAA GTGTGGAAGA ATGCATGTAA GAAGACACAG TGATGTTTAG 001120
001121 AATCCTGGGG AAACGGAACA GCCAAAAAGT CTCACAGAGG TTAAGTAAAT AATAGCATTT TCATACGAGT ACTATGTAGT 001200
001201 CATTTAAAAT TATGTCTTTC AGTACCTAGT AATGGGGAAA ATGTATTCAT TATATATTAT TAAAGAAAAT ACAGGGTA
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Predicted Small Protein

Name ENST00000434547.1_smProtein_266:496
Length 77
Molecular weight 8303.2073
Aromaticity 0.0789473684211
Instability index 68.225
Isoelectric point 9.59991455078
Runs 9
Runs residual 0.0229885057471
Runs probability 0.0354962805943
Amino acid sequence MGRRGQGGREENGRKARLDFELQPSPSFPCLGSSRPTQHQFCLLFSAAFSLATEGKSQDE
AGPSASRRCFITVANR
Secondary structure LLLLLLLLLLLLLLEEEELEEELLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLL
LLLLLLLEEEEEEELL
PRMN -
PiMo -