ENST00000432429.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000432429.1 |
Source |
Gencode19 |
Same with |
lnc-CAMTA1-1:2,NONHSAT000679 |
Classification |
intergenic |
Length |
1686 nt |
Genomic location |
chr1+:6784697..6787468 |
Exon number |
2 |
Exons |
6784697..6784910,6785997..6787468 |
Genome context |
|
Sequence |
000001 AGGGCTGTTG TTTTTGCCTG TCATGGAGTT CCGTTCATTC TGAACATGTC ACCGGGGACT TTGGAATGTG TATCCATAAC 000080
000081 TCCCTGATTT TCAACCACAT TCCAGCCTGC CTGACTCATG AAGCGTGGAG CGACCCAGGA ACATCCCAGC TCCTCATGTC 000160 000161 CCACATTCTT CAGGCTTTCT CTTAGTTTTG GCATGTGCAT GTAAATGTCA ACAGCTGCTT CTGCTGACTC CTCGTCTCAA 000240 000241 TTAATCGCGG CTCTGTCTTC CGTTTGCTGA AGCCGAAGAC CTCCCCGCTC TCTCAGAGCC CATGTCTGGC ACATCAGCGA 000320 000321 ATCTCGTTGG CACTGCCGTC AAACACATCC ATCTAGGATC TCCCCGCACT TCACGCCACC CACCGCGCTA GTCTGTGGAT 000400 000401 CCCTGTTTCT CTCTTGGATG TAGTAATAGT CACATAGCTG GACTTCTGCC CTGGCACTTC TTCAGCCCCT TGTTAGAGGA 000480 000481 ATCCTGCTAA ATGTTGGATG ATTTACCCCC CACCTCCCGC ACCCCCCGCC ACACACACAT AGGAGCTCCA CTGGCTCCTC 000560 000561 ATAACTCTCA GGGTGCCAGC CTGTCTCTGC CATGACCCGA AAGCTCTCCG TCATCTGTCT CCCGCCCCTC CCTCACTGAC 000640 000641 TCTATCTGCC ACCCTCTCCC TGTTGTCCAC GCTGCCCCAG CCCCACAGGC CTCCTCCTGT TCCTCAGACT CCCCAGGGAT 000720 000721 ACTCCTGCCT CAGGGCCTTT GCCCTGGCTA TTCCCTCCAG CTACAATGCT CTTCCTGAAT CTGCATGATT CGATGCCCAC 000800 000801 TCCCCCATTC TCAGCCTGTC CCCACATCTC AGTGAGCCCT GCCCGGGCCA CCCTGGAAAA TCTCAGCATC CCAGGCTGGG 000880 000881 CGTGGTGGCT CATGCCTGTA ATCTCAGCAC CTTGGGAGGC CAAGGCAGGC AGATTGCTTG AGCTCAGGAG TTTGAGACCA 000960 000961 GCCTGGCCAA CATGGCGAAA CCCCATCTCT CCTAAAAATA CAAAAATTAG CTGAGTGTGG TGGTGCGTGC CTGTAATCAC 001040 001041 AGCTACTTGG GAGGCTGAGG CAGCAGAATC GATTGAACCT GGGAGGCAGA GGTTTCAGTG AGCCGAGATC ATGCCACTGC 001120 001121 ACTCCAGCCT GGGCGACAGA GCGAGACTCC ATCTAACACA CACAAAAAAA GCACTTTTTT TTCATCCTCC CAGCACTTCT 001200 001201 TGTCCTCCTT GCTTCCCTTG TTTTTTTTTT TTTTCACATT CACACATATG ATGATCCAGC ATTCTACATA TTTTATTTAT 001280 001281 CTTATTTATT TTCAGTCTTC TCCACTCAAA TGTATGATAT TTAAGGCAGG GGTTTTAAAA TGTCTTGTTC TTGGCCAGGC 001360 001361 ATGGTGGCTC ACACGTGTAA TTCTAGCACT TTGGGAGGCC GAGGCAGGTG GAGCACCTGA GGTCAGGAGT TCAAGACCAG 001440 001441 CCTGGTCAAC ATGGCGAAAC CCCGTCTCTA CTAAAAATAC GAAATTAGCC AGGCGTGGTG GCGGACGCCT GTAATCCCAG 001520 001521 CTATAATCCC AGCTACTCAG GAGGCTGAAG CAGGAGAATC GCTTGAACCT GGGAGGCAGA GCTTGCAGTG AGCCGAGATC 001600 001601 ACGCCACTAC ACTGCAGCCT GGGTGACAGA GTGAGACTCC ATCTCAAAAA ACAACAACAA AATAAATAAA TAAATAAAAA 001680 001681 TAAAAT |
Predicted Small Protein
Name | ENST00000432429.1_smProtein_1247:1513 |
Length | 89 |
Molecular weight | 10015.7378 |
Aromaticity | 0.125 |
Instability index | 56.5954545455 |
Isoelectric point | 10.4432983398 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.038380626616 |
Amino acid sequence | MMIQHSTYFIYLIYFQSSPLKCMIFKAGVLKCLVLGQAWWLTRVILALWEAEAGGAPEVR SSRPAWSTWRNPVSTKNTKLARRGGGRL |
Secondary structure | LEEEEEEEEEEEEEEELLLLLEEEELLLLHHHHHHLHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLLLLLLLLLHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiii |