ENST00000429781.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000429781.1 |
Source |
Gencode19 |
Same with |
lnc-PTCH1-3:3,NONHSAT133397 |
Classification |
intergenic |
Length |
2825 nt |
Genomic location |
chr9-:98602882..98637869 |
Exon number |
3 |
Exons |
98602882..98605032,98612509..98612574,98637262..98637869 |
Genome context |
|
Sequence |
000001 CTTTCTGTGG GCGGAGCAAT CTTCCCGATG TCTCTTCCCT CTGAGGCCAG TAGCAGGAAG GGCCTCGGGA GTTGCGAGTG 000080
000081 TCGCGAGGTT TGAGGTCGCT CGGTGGGCCG GGCGCTGTGC GAAGCTAGAA ATAACTGGGG GCATGGAGAA TGCGGTGGCT 000160 000161 GTAAAGGGCC GCTGAGGCGG TGGAGGCCTG GCAGAGAGCG TCCCCGCGGT CGCGGCTTCT GGCTTCTCTG TGGAGCTTGG 000240 000241 TTCTTCCGTG GTGGTGCAGC ACCCCAGGAA CTTCAGGAAC CAGTCCTTCC TTGGAGAGCT CCCCGGGACA GCCACGGGGG 000320 000321 CCAAGTGAAA CTAGCGCGTT TTCTTGGATC CTACACTTTA TAGTGAGTCA TAAATACTTT AAATACAAAG CCAACAACAT 000400 000401 TTGCTGCAAA TAAACGTAAA AATACTGTTA AAGTGTAAAG TGTTTTCCTC CGTACCATCT GACGTTTCTG GCGGTTCGTT 000480 000481 GAACGCGAGA GAACGCTGAG CCGTCTGCAC TGAGCCCGGG AGCATCTTCA GGGCAGCGCC GCCCACGCGC GAGGTGAATG 000560 000561 AAGGACACGG CCTCTTGACA CTCCCAGGCA GCACAGATAG ACGGATCCAT CCCAGTTTCT GACCTGTAGC ATAGTCCCTC 000640 000641 TCTCTGAAGA ACTTCCTGTA ATATTTTTTG CTAGATGGAG TCTTGCTCTG TCACCAGGCT GGAGGGCAGT GGCGCCATCT 000720 000721 CGGCTCACTG CAAACTCTGC CTCCCGGGTT CAAGCGATTC TCCTCCCTCA GCCTCCTGAG TAGCTGGGAC TACAGGCGTG 000800 000801 TGCCACCAAG CCCAGCTAAT TTTTGTATTT TAGTAGAGAC AGGGTTTCAC CATGTTGGCC AGGATGGTCT CGATCTCTTG 000880 000881 ACCTCGTGAT CCACCCACCT CGGCCTCCCA AAGTGCTGGG ATTACAGGCA TGAGCCACCA TGCCCAACCC AAGAATTTAC 000960 000961 ATTTCTAACA AGTTCCCAGG TAATGCTTAT GCTGCTGGCC TAGAAACCAC ACTTGAAGAA ACCACTCCTT CAGAAAATAG 001040 001041 TTCTTGTCTC CCAAGAGGAG AAGGAATGCG AAAGAGGATT TTAAAGAAAG CTTCCAAATT GTGGCCAACT CTGATAGAAG 001120 001121 ATCATAGACA CTTGAAACTC AGTGCTGAAG AGGATGCTGT AGTCATGCCC AGGCTCAATG GGAAAGAGCT CCAGGATGAG 001200 001201 GGGGGCTTGC ATACCATGGG ACGGGGGAGG AATTGACAAC AAAGATCCAC ATATTTATCA TCCACAAGGT TGGTTGGTCT 001280 001281 TAATCTTGTG CTTGTCGTAT CCATTTTATA ATACAATCAC ATTCGTACAC TTGACTTTAA TTTACATCAC AGAGTTATAT 001360 001361 GTCTTTGATG CAAGACTTCA GCAAAATGGC CCAGCCAGGG TGTTAGGGTT TTCTGGCACT CTACCCATGG AAGAGGAGAG 001440 001441 GATTGGAATG AAGAGAGGAA GGCACAAGGG AGAAAGCTGA CATATGGAAT CAAGTTGGAG AAAATAGTGG GAAATAGAAA 001520 001521 AGTGTGTGCA AAGATTTATT GTGAATTCCT AAGTACTCAA TTAAAAGCAG ACCAAAACTT GAGAATTGGG TTGAAGGCTA 001600 001601 AGGACTGTGA GTGGGGAAAG GGTGGACAAT GCATTTTCAG GGACCAGCCC CATCACTGGC TCAGGGTTTC CTAGGCACGG 001680 001681 CTCTTCTCAG GCAAGCTGTG CTGGAAGCCT GGATTACATC TGGAATTCAA GAACTCTCCC TGTTTCAAAT ACAGCCTAGA 001760 001761 GAACACAGGT GGTCCACAGG CTGCATTTTT GCCACCCACA ACTTTGGGCC ACATTTAGAG GAGCCAGTGA AAGAATCAAT 001840 001841 CTGCTGAGTC AGAAGAAAAT TCAACAAGCT CTTATCCAAA TAGGCACTCG TACGTGTTGC CATATTAAAG ATGCAAGTGG 001920 001921 TCCCATTAGT AATAAACTCT TCAGACACAA AAGGCATTTG TGTCACAAAT TCTGTACAAG TTATAAATAG AGGGAAAAGC 002000 002001 ATCTGGGAAT GTGAAGTCAA GAGTCCTGTG TTTTGACTCT AGCTCAAGTG CAGACCAAAA ACATAGGCGT TCACCTCTCA 002080 002081 GTTCAGTTTA ACAATATTTC TCAAGGATCT ATCTGTGAGG CACTTGGATG CATGGTCTAT AAATAAGACC AAGTCCCTTT 002160 002161 CTTGAAAGTG CTTAAAATCT AATGAAGGGG AGGGAGATAA ATACACAAAT CAATGGATTC AAGACAGGGT ATTGAAGATG 002240 002241 TTATGAGAGT AATACAAGTA AAACATTGAC CAAGTTAAAA AGGACAAAAC AAAACAGCAA GTAAGGTGTT AACTCCTCCA 002320 002321 TATTCCATTA GAATACTCTT AGCATGCCCA GTTCCTGACA CAAAAGTAGG CATTTGATAA ATGGCTCTTT GAGTAAATTA 002400 002401 AATGAGCATT ATCTCTTCCC AGACCTAAAC AGCCCACCAA TGACCTAGTT TACAATTTAT GCACTGTTAA TTTGCCTAAT 002480 002481 TAGACCCAGT ATCTACTTCT GTGCCACAAA ATCATATGAT TAGAGCATTA ACAGTCATGA AACGCTTTAT AGACCTGGAC 002560 002561 TTCTCCAATC GAGGACATTA CAATCTACTA AATAAAGAAT AACTTGAAGA GGGATTTAAA TAGAGGAGGG TATTGAGAAA 002640 002641 GCCATAAATT TAGTAAAAGA GAAGTTAAAA TCGGCACGTG GGGTTCATAG CATTAAAGGA CATGATTTAC CTCTGAAACT 002720 002721 CATGTTTGTT TCTACCAGAT GAGCAGGAAG AGATTCCAAA GAGGAAAAGA TGATTAGAAG TAGGAATAAC TAGCTTGGGC 002800 002801 AAAGTGGCAA GACCTCCATC TCTTT |
Predicted Small Protein
Name | ENST00000429781.1_smProtein_1628:1846 |
Length | 73 |
Molecular weight | 8030.0984 |
Aromaticity | 0.0972222222222 |
Instability index | 50.7791666667 |
Isoelectric point | 6.01007080078 |
Runs | 11 |
Runs residual | 0.0118613138686 |
Runs probability | 0.038107626343 |
Amino acid sequence | MHFQGPAPSLAQGFLGTALLRQAVLEAWITSGIQELSLFQIQPREHRWSTGCIFATHNFG PHLEEPVKESIC |
Secondary structure | LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLHHHLLLEEELLLLLEELLLEEEEELLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |