ENST00000428029.2
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000428029.2 |
Source |
Gencode19 |
Same with |
lnc-RHOF-1:7,NONHSAT031460 |
Classification |
intergenic |
Length |
1024 nt |
Genomic location |
chr12-:122233546..122240839 |
Exon number |
5 |
Exons |
122233546..122234148,122237753..122237862,122239613..122239714,122240537..122240690,122240785..122240839 |
Genome context |
|
Sequence |
000001 GGAGAGGCCA ACAGATGAGG GAAGCCATTT TTCTGCAATG GAATTAAATG GCCAAGCCCA AGGACTCACA GTTGGAAGAC 000080
000081 TGGAGAAGAC TTTTTAAAAA GATCTGGATT TTTCCTTATG ACTTGGAATC CATCTTTGTC TTGTATAACT AGGTCATAGC 000160 000161 ACACCATTCA TGTCAGCAGT TAACAGTTTT GAATTCCAAA AAAACCTAAA GCAGTAAACA GTCCTCAGCG AAGCCGCCTT 000240 000241 TTTGCCTACC CAACCCTGGA AAGTTTGCAG AAGTGGAAGG AGCAGAACGT GAGGGTGTAA CTTACAAAAA GGTTCTGGGC 000320 000321 CGGAGAAGGG GCGACGTTCG GGCACCCCCC GAATGGACAA TCTTTCCTTC TGTCAACGGC AGGGGCAGGC CTAGTTTGAC 000400 000401 TCTGACAGTC CTCCCACTAA GGAATTCCTG GTGACTGGAA GGGGGAGTGA CTCAGGCCCT CAACCTCTAG CAGGTAAGGG 000480 000481 AGCTACCTCC TGGGTGGGCA TGCCCAGTTC CTCAGTGGGC CCAGCGCGGC CCAGCCTCCG AGGAAGCTCT GAGCAGCTGG 000560 000561 CTTGGCTCCG AGGTATTTTT AGCTACAGAT CCAGCCCCCC TCCATCACCA CAACAGTCGA GTCCAAATCA AACGCGCTCC 000640 000641 AGGCAGGTGG GGCTGGGGTT CTGCCAGCCT CCTGGCCAGC AGGGGTGGGT GGGCAGACTG GGGCCAGTAT CAGCTGTTCT 000720 000721 GCCTGGACCC AGGCCGGGCT GGGAAGGCAC ACTTGTGCTT ATTTCCCGCC TCCACTTCTG TGCAAGCTTG TGCTGTCATA 000800 000801 AGCAGAGATC ACAGCCCCAT TTCTTGGATG GAGAAAGTGG ACACTGAGGT CTGAGGCTTT TGAGGACAGT CAGGAGCCCT 000880 000881 CCTATGGGCT CCAGTGATGC ACTCACCAGC TTCTGGTCCT CTTCTTCCAC CTCTTAGAGT GCCTTGGCTC CCTCCTGTCG 000960 000961 TCCTGGGGAA CCTCGGCCCC AGCCCTGCCT CCCCAGCCAG TCACAGCTCC TCCCTGGTCA CCCT |
Predicted Small Protein
Name | ENST00000428029.2_smProtein_47:151 |
Length | 35 |
Molecular weight | 4290.9786 |
Aromaticity | 0.205882352941 |
Instability index | 56.3352941176 |
Isoelectric point | 8.09844970703 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0403765109647 |
Amino acid sequence | MAKPKDSQLEDWRRLFKKIWIFPYDLESIFVLYN |
Secondary structure | LLLLLLLHHHHHHHHHHHHHEELLLHHHHEEEEL |
PRMN | - |
PiMo | - |